Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Vps53Q8CCB4 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Vps53Q8CCB4 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Mir8112-201ENSMUST00000184382 131 ntBASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.86■□□□□ 0.77
Vps53Q8CCB4 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Vps53Q8CCB4 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.84■□□□□ 0.77
Vps53Q8CCB4 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.84■□□□□ 0.77
Vps53Q8CCB4 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Vps53Q8CCB4 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps53Q8CCB4 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps53Q8CCB4 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps53Q8CCB4 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps53Q8CCB4 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps53Q8CCB4 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Vps53Q8CCB4 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Vps53Q8CCB4 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Vps53Q8CCB4 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Vps53Q8CCB4 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Vps53Q8CCB4 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
Vps53Q8CCB4 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Vps53Q8CCB4 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.81■□□□□ 0.76
Vps53Q8CCB4 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.8■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms