Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Gm20760-201ENSMUST00000179197 648 ntBASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc40Q8BI79 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Gm12382-201ENSMUST00000122005 922 ntBASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ccdc40Q8BI79 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Ccdc40Q8BI79 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.77■□□□□ 0.43
Ccdc40Q8BI79 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Gm37292-201ENSMUST00000192062 758 ntBASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Ccdc40Q8BI79 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Ccdc40Q8BI79 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Ccdc40Q8BI79 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms