Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp49Q6P9L4 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.08■□□□□ 0.65
Usp49Q6P9L4 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp49Q6P9L4 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Usp49Q6P9L4 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp49Q6P9L4 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Gm21814-202ENSMUST00000203277 873 ntBASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Gm7791-201ENSMUST00000219066 539 ntBASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp49Q6P9L4 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 AC158538.1-201ENSMUST00000225870 294 ntBASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp49Q6P9L4 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Gm27000-201ENSMUST00000182943 842 ntBASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Arhgef33-211ENSMUST00000225658 473 ntBASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Odf3b-204ENSMUST00000227834 930 ntBASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Usp49Q6P9L4 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Il3ra-202ENSMUST00000223589 738 ntBASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp49Q6P9L4 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms