Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
Rtl3Q6P1Y1 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Rtl3Q6P1Y1 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Rtl3Q6P1Y1 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Rtl3Q6P1Y1 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Gm10819-201ENSMUST00000099988 561 ntBASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Rtl3Q6P1Y1 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
Rtl3Q6P1Y1 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Gm2274-201ENSMUST00000184539 609 ntBASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rtl3Q6P1Y1 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rtl3Q6P1Y1 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Gm18959-201ENSMUST00000208954 655 ntBASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rtl3Q6P1Y1 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms