Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim27Q62158 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Trim27Q62158 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC20.94■□□□□ 0.94
Trim27Q62158 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim27Q62158 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC20.94■□□□□ 0.94
Trim27Q62158 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim27Q62158 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim27Q62158 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim27Q62158 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trim27Q62158 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trim27Q62158 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim27Q62158 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim27Q62158 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
Trim27Q62158 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim27Q62158 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim27Q62158 Gm13216-201ENSMUST00000117145 591 ntBASIC20.93■□□□□ 0.94
Trim27Q62158 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC20.93■□□□□ 0.94
Trim27Q62158 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim27Q62158 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.93■□□□□ 0.94
Trim27Q62158 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim27Q62158 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.93■□□□□ 0.94
Trim27Q62158 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trim27Q62158 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trim27Q62158 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trim27Q62158 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Gm45774-201ENSMUST00000211992 2665 ntBASIC20.92■□□□□ 0.94
Trim27Q62158 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Trim27Q62158 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.92■□□□□ 0.94
Trim27Q62158 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Trim27Q62158 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Trim27Q62158 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.92■□□□□ 0.94
Trim27Q62158 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Trim27Q62158 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
Trim27Q62158 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Trim27Q62158 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trim27Q62158 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Trim27Q62158 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.91■□□□□ 0.94
Trim27Q62158 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Trim27Q62158 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Trim27Q62158 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
Trim27Q62158 Gm27463-201ENSMUST00000183569 57 ntBASIC20.91■□□□□ 0.94
Trim27Q62158 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim27Q62158 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim27Q62158 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim27Q62158 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trim27Q62158 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trim27Q62158 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC20.9■□□□□ 0.94
Trim27Q62158 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Gm18958-201ENSMUST00000174258 762 ntBASIC20.9■□□□□ 0.94
Trim27Q62158 Gm30025-201ENSMUST00000218555 728 ntBASIC20.9■□□□□ 0.94
Trim27Q62158 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Trim27Q62158 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trim27Q62158 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Trim27Q62158 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim27Q62158 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim27Q62158 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trim27Q62158 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim27Q62158 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim27Q62158 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
Trim27Q62158 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC20.89■□□□□ 0.93
Trim27Q62158 Gm11539-201ENSMUST00000119837 557 ntBASIC20.89■□□□□ 0.93
Trim27Q62158 Gm13436-201ENSMUST00000120418 567 ntBASIC20.89■□□□□ 0.93
Trim27Q62158 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.89■□□□□ 0.93
Trim27Q62158 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Trim27Q62158 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim27Q62158 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim27Q62158 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim27Q62158 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Trim27Q62158 Wnt10b-204ENSMUST00000226655 1807 ntBASIC20.89■□□□□ 0.93
Trim27Q62158 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim27Q62158 Gm36858-201ENSMUST00000194501 2391 ntBASIC20.89■□□□□ 0.93
Trim27Q62158 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trim27Q62158 Gm8839-201ENSMUST00000121279 1645 ntBASIC20.89■□□□□ 0.93
Trim27Q62158 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trim27Q62158 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms