Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps54Q5SPW0 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps54Q5SPW0 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps54Q5SPW0 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps54Q5SPW0 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Gm6659-201ENSMUST00000174752 547 ntBASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Mir1668-201ENSMUST00000184114 107 ntBASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Gm18101-201ENSMUST00000215769 548 ntBASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps54Q5SPW0 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
Vps54Q5SPW0 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Actl10-202ENSMUST00000226583 1501 ntBASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Gm10013-201ENSMUST00000106074 672 ntBASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps54Q5SPW0 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Wnt10b-204ENSMUST00000226655 1807 ntBASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vps54Q5SPW0 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Gm21559-201ENSMUST00000220638 855 ntBASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Gm8587-201ENSMUST00000076538 843 ntBASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps54Q5SPW0 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Gm43294-201ENSMUST00000202850 2490 ntBASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Vps54Q5SPW0 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms