Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trav5d-4Q5R1F6 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trav5d-4Q5R1F6 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trav5d-4Q5R1F6 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Gm24841-201ENSMUST00000158676 357 ntBASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trav5d-4Q5R1F6 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Trav5d-4Q5R1F6 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
Trav5d-4Q5R1F6 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
Trav5d-4Q5R1F6 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trav5d-4Q5R1F6 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav5d-4Q5R1F6 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav5d-4Q5R1F6 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav5d-4Q5R1F6 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav5d-4Q5R1F6 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav5d-4Q5R1F6 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav5d-4Q5R1F6 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trav5d-4Q5R1F6 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms