Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Trav6-3Q5R1E6 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav6-3Q5R1E6 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav6-3Q5R1E6 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC13.71□□□□□ -0.21
Trav6-3Q5R1E6 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Trav6-3Q5R1E6 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC13.71□□□□□ -0.22
Trav6-3Q5R1E6 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav6-3Q5R1E6 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav6-3Q5R1E6 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trav6-3Q5R1E6 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trav6-3Q5R1E6 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trav6-3Q5R1E6 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Gm24841-201ENSMUST00000158676 357 ntBASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Gm10517-202ENSMUST00000192970 758 ntBASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Gm28265-201ENSMUST00000188201 2319 ntBASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Trav6-3Q5R1E6 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Gm20049-201ENSMUST00000219950 730 ntBASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trav6-3Q5R1E6 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 AC107711.5-202ENSMUST00000226429 702 ntBASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Trav6-3Q5R1E6 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms