Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp28Q5I043 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
Usp28Q5I043 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Gm5643-201ENSMUST00000117081 966 ntBASIC19.38■□□□□ 0.69
Usp28Q5I043 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.38■□□□□ 0.69
Usp28Q5I043 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC19.38■□□□□ 0.69
Usp28Q5I043 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp28Q5I043 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Usp28Q5I043 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.37■□□□□ 0.69
Usp28Q5I043 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Usp28Q5I043 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Usp28Q5I043 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC19.37■□□□□ 0.69
Usp28Q5I043 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp28Q5I043 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Gm26917-202ENSMUST00000192833 3329 ntBASIC19.36■□□□□ 0.69
Usp28Q5I043 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.36■□□□□ 0.69
Usp28Q5I043 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Usp28Q5I043 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Usp28Q5I043 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp28Q5I043 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
Usp28Q5I043 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.35■□□□□ 0.69
Usp28Q5I043 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.35■□□□□ 0.69
Usp28Q5I043 Gm17661-201ENSMUST00000170317 270 ntBASIC19.35■□□□□ 0.69
Usp28Q5I043 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp28Q5I043 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC19.35■□□□□ 0.69
Usp28Q5I043 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp28Q5I043 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Usp28Q5I043 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.34■□□□□ 0.69
Usp28Q5I043 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.34■□□□□ 0.69
Usp28Q5I043 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp28Q5I043 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Usp28Q5I043 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp28Q5I043 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Usp28Q5I043 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usp28Q5I043 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usp28Q5I043 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Usp28Q5I043 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usp28Q5I043 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Usp28Q5I043 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.33■□□□□ 0.68
Usp28Q5I043 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
Usp28Q5I043 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp28Q5I043 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp28Q5I043 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp28Q5I043 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Usp28Q5I043 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.33■□□□□ 0.68
Usp28Q5I043 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.68
Usp28Q5I043 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Usp28Q5I043 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Usp28Q5I043 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Usp28Q5I043 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms