Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Gm44450-201ENSMUST00000199528 114 ntBASIC20.09■□□□□ 0.81
Rnf180Q3U827 Gm44945-201ENSMUST00000206764 1187 ntBASIC20.09■□□□□ 0.81
Rnf180Q3U827 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.09■□□□□ 0.81
Rnf180Q3U827 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Rnf180Q3U827 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Gm18421-201ENSMUST00000204122 625 ntBASIC20.08■□□□□ 0.81
Rnf180Q3U827 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf180Q3U827 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.08■□□□□ 0.8
Rnf180Q3U827 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC20.07■□□□□ 0.8
Rnf180Q3U827 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Rnf180Q3U827 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.06■□□□□ 0.8
Rnf180Q3U827 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf180Q3U827 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Mir1895-201ENSMUST00000122615 79 ntBASIC20.06■□□□□ 0.8
Rnf180Q3U827 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Gm7229-201ENSMUST00000214719 1007 ntBASIC20.06■□□□□ 0.8
Rnf180Q3U827 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf180Q3U827 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf180Q3U827 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf180Q3U827 Gm15653-201ENSMUST00000119247 907 ntBASIC20.05■□□□□ 0.8
Rnf180Q3U827 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf180Q3U827 Mir6977-201ENSMUST00000184960 64 ntBASIC20.05■□□□□ 0.8
Rnf180Q3U827 Gm5312-201ENSMUST00000203728 547 ntBASIC20.05■□□□□ 0.8
Rnf180Q3U827 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf180Q3U827 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Rnf180Q3U827 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf180Q3U827 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf180Q3U827 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Gm11873-201ENSMUST00000117877 1304 ntBASIC20.04■□□□□ 0.8
Rnf180Q3U827 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.04■□□□□ 0.8
Rnf180Q3U827 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf180Q3U827 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.03■□□□□ 0.8
Rnf180Q3U827 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Gm12497-201ENSMUST00000138778 237 ntBASIC20.03■□□□□ 0.8
Rnf180Q3U827 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC20.03■□□□□ 0.8
Rnf180Q3U827 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Rnf180Q3U827 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rnf180Q3U827 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Rnf180Q3U827 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Rnf180Q3U827 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms