Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Chmp6P0C0A3 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Chmp6P0C0A3 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Chmp6P0C0A3 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Chmp6P0C0A3 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Gm8969-201ENSMUST00000199694 526 ntBASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.58■□□□□ 0.56
Chmp6P0C0A3 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chmp6P0C0A3 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chmp6P0C0A3 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Chmp6P0C0A3 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chmp6P0C0A3 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chmp6P0C0A3 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms