Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Hoxd3P09027 Gm6659-201ENSMUST00000174752 547 ntBASIC13.25□□□□□ -0.29
Hoxd3P09027 Gm22697-201ENSMUST00000175194 63 ntBASIC13.25□□□□□ -0.29
Hoxd3P09027 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Hoxd3P09027 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hoxd3P09027 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Hoxd3P09027 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Hoxd3P09027 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hoxd3P09027 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Hoxd3P09027 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Hoxd3P09027 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Hoxd3P09027 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC13.24□□□□□ -0.29
Hoxd3P09027 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC13.24□□□□□ -0.29
Hoxd3P09027 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Hoxd3P09027 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC13.24□□□□□ -0.29
Hoxd3P09027 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Gm19439-201ENSMUST00000198195 2273 ntBASIC13.24□□□□□ -0.29
Hoxd3P09027 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Hoxd3P09027 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Hoxd3P09027 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Hoxd3P09027 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 AC153937.1-201ENSMUST00000218734 412 ntBASIC13.23□□□□□ -0.29
Hoxd3P09027 Gm7370-201ENSMUST00000219471 767 ntBASIC13.23□□□□□ -0.29
Hoxd3P09027 AC130671.1-201ENSMUST00000227384 1237 ntBASIC13.23□□□□□ -0.29
Hoxd3P09027 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
Hoxd3P09027 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Hoxd3P09027 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Spsb2-203ENSMUST00000112473 1322 ntBASIC13.22□□□□□ -0.29
Hoxd3P09027 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC13.22□□□□□ -0.29
Hoxd3P09027 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
Hoxd3P09027 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC13.22□□□□□ -0.29
Hoxd3P09027 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Hoxd3P09027 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms