Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.4■□□□□ 0.54
Vti1aO89116 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Vti1aO89116 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Vti1aO89116 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC18.4■□□□□ 0.54
Vti1aO89116 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.4■□□□□ 0.54
Vti1aO89116 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.4■□□□□ 0.54
Vti1aO89116 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Vti1aO89116 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Vti1aO89116 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Vti1aO89116 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vti1aO89116 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vti1aO89116 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vti1aO89116 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Vti1aO89116 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Vti1aO89116 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Vti1aO89116 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Gm9103-201ENSMUST00000119371 405 ntBASIC18.38■□□□□ 0.53
Vti1aO89116 Gm7284-201ENSMUST00000131667 944 ntBASIC18.38■□□□□ 0.53
Vti1aO89116 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.38■□□□□ 0.53
Vti1aO89116 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Vti1aO89116 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.38■□□□□ 0.53
Vti1aO89116 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Vti1aO89116 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.38■□□□□ 0.53
Vti1aO89116 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.38■□□□□ 0.53
Vti1aO89116 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Vti1aO89116 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Vti1aO89116 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
Vti1aO89116 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Vti1aO89116 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.37■□□□□ 0.53
Vti1aO89116 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.37■□□□□ 0.53
Vti1aO89116 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Vti1aO89116 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Vti1aO89116 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Vti1aO89116 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.36■□□□□ 0.53
Vti1aO89116 Ank2-226ENSMUST00000189368 339 ntBASIC18.36■□□□□ 0.53
Vti1aO89116 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Gm21559-201ENSMUST00000220638 855 ntBASIC18.36■□□□□ 0.53
Vti1aO89116 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Vti1aO89116 Gm8587-201ENSMUST00000076538 843 ntBASIC18.36■□□□□ 0.53
Vti1aO89116 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Vti1aO89116 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vti1aO89116 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vti1aO89116 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vti1aO89116 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Vti1aO89116 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Vti1aO89116 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Vti1aO89116 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms