Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Gm21956-201ENSMUST00000179946 522 ntBASIC14.2□□□□□ -0.14
Hmgb3O54879 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC14.2□□□□□ -0.14
Hmgb3O54879 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC14.2□□□□□ -0.14
Hmgb3O54879 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC14.2□□□□□ -0.14
Hmgb3O54879 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Hmgb3O54879 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Hmgb3O54879 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Gm44544-201ENSMUST00000207052 1844 ntBASIC14.2□□□□□ -0.14
Hmgb3O54879 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Haglr-201ENSMUST00000100000 2085 ntBASIC14.19□□□□□ -0.14
Hmgb3O54879 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hmgb3O54879 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Hmgb3O54879 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC14.18□□□□□ -0.14
Hmgb3O54879 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC14.18□□□□□ -0.14
Hmgb3O54879 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Hmgb3O54879 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Hmgb3O54879 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hmgb3O54879 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC14.17□□□□□ -0.14
Hmgb3O54879 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC14.17□□□□□ -0.14
Hmgb3O54879 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Hmgb3O54879 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Hmgb3O54879 Gm9988-201ENSMUST00000069786 435 ntBASIC14.17□□□□□ -0.14
Hmgb3O54879 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Hmgb3O54879 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Hmgb3O54879 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hmgb3O54879 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms