Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sdc4O35988 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.58■□□□□ 0.41
Sdc4O35988 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.58■□□□□ 0.41
Sdc4O35988 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sdc4O35988 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sdc4O35988 Gm9013-201ENSMUST00000132939 882 ntBASIC17.58■□□□□ 0.4
Sdc4O35988 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Sdc4O35988 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sdc4O35988 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Sdc4O35988 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sdc4O35988 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Sdc4O35988 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sdc4O35988 Gm37811-201ENSMUST00000192416 2601 ntBASIC17.58■□□□□ 0.4
Sdc4O35988 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sdc4O35988 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sdc4O35988 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.57■□□□□ 0.4
Sdc4O35988 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.57■□□□□ 0.4
Sdc4O35988 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Gm26039-201ENSMUST00000158152 144 ntBASIC17.57■□□□□ 0.4
Sdc4O35988 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.57■□□□□ 0.4
Sdc4O35988 Gm33142-201ENSMUST00000193913 867 ntBASIC17.57■□□□□ 0.4
Sdc4O35988 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.57■□□□□ 0.4
Sdc4O35988 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sdc4O35988 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.56■□□□□ 0.4
Sdc4O35988 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Sdc4O35988 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.56■□□□□ 0.4
Sdc4O35988 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Gm11355-201ENSMUST00000121120 306 ntBASIC17.56■□□□□ 0.4
Sdc4O35988 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.56■□□□□ 0.4
Sdc4O35988 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.56■□□□□ 0.4
Sdc4O35988 Gm8969-201ENSMUST00000199694 526 ntBASIC17.56■□□□□ 0.4
Sdc4O35988 Gm5587-201ENSMUST00000206270 674 ntBASIC17.56■□□□□ 0.4
Sdc4O35988 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sdc4O35988 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Sdc4O35988 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.56■□□□□ 0.4
Sdc4O35988 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.55■□□□□ 0.4
Sdc4O35988 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sdc4O35988 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Sdc4O35988 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.55■□□□□ 0.4
Sdc4O35988 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.55■□□□□ 0.4
Sdc4O35988 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.55■□□□□ 0.4
Sdc4O35988 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.55■□□□□ 0.4
Sdc4O35988 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sdc4O35988 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Sdc4O35988 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Sdc4O35988 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Sdc4O35988 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Sdc4O35988 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.54■□□□□ 0.4
Sdc4O35988 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Sdc4O35988 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Sdc4O35988 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.53■□□□□ 0.4
Sdc4O35988 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Sdc4O35988 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sdc4O35988 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Sdc4O35988 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms