Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a3E9PWQ3 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a3E9PWQ3 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a3E9PWQ3 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col6a3E9PWQ3 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col6a3E9PWQ3 Gm11336-201ENSMUST00000118168 334 ntBASIC17.07■□□□□ 0.32
Col6a3E9PWQ3 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.07■□□□□ 0.32
Col6a3E9PWQ3 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col6a3E9PWQ3 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Col6a3E9PWQ3 Grk6-206ENSMUST00000224995 2971 ntBASIC17.07■□□□□ 0.32
Col6a3E9PWQ3 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col6a3E9PWQ3 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Col6a3E9PWQ3 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Gm18187-201ENSMUST00000196476 984 ntBASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Tgds-204ENSMUST00000228543 1594 ntBASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Gm27437-201ENSMUST00000183429 107 ntBASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Gm42934-201ENSMUST00000196920 1345 ntBASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col6a3E9PWQ3 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 AC174742.1-201ENSMUST00000218272 304 ntBASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Cdk7-205ENSMUST00000225990 1159 ntBASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col6a3E9PWQ3 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 AC132467.2-202ENSMUST00000227726 559 ntBASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col6a3E9PWQ3 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Gm27622-201ENSMUST00000183779 60 ntBASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col6a3E9PWQ3 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms