| Rai1 | Q61818 | Gm25156-201 | ENSMUST00000179809 | 79 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm23648-201 | ENSMUST00000180301 | 107 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Mir6335-201 | ENSMUST00000184081 | 98 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm38044-201 | ENSMUST00000192964 | 487 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | A730009L09Rik-202 | ENSMUST00000210306 | 201 nt | APPRIS ALT2 TSL 5 BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm23506-201 | ENSMUST00000083077 | 107 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Defb41-202 | ENSMUST00000097817 | 198 nt | APPRIS P1 TSL 1 (best) BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm43484-201 | ENSMUST00000198333 | 5966 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm14797-201 | ENSMUST00000119378 | 1480 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Olfr138-202 | ENSMUST00000172843 | 1769 nt | APPRIS P1 TSL 2 BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm22091-201 | ENSMUST00000116908 | 127 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm12393-201 | ENSMUST00000117084 | 848 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm14215-201 | ENSMUST00000120578 | 221 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm23586-201 | ENSMUST00000157657 | 123 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm25454-201 | ENSMUST00000157947 | 315 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm23032-201 | ENSMUST00000157995 | 107 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm25020-201 | ENSMUST00000178071 | 107 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm24713-201 | ENSMUST00000178850 | 107 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm25448-201 | ENSMUST00000180065 | 107 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm36966-201 | ENSMUST00000192217 | 413 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm37801-201 | ENSMUST00000194754 | 274 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm37029-201 | ENSMUST00000195773 | 239 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm33866-201 | ENSMUST00000196911 | 289 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | AC140477.1-201 | ENSMUST00000222354 | 246 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Mir344-201 | ENSMUST00000083634 | 95 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Rps24-ps2-201 | ENSMUST00000091375 | 395 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| Rai1 | Q61818 | Gm15452-201 | ENSMUST00000119877 | 240 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm25294-201 | ENSMUST00000122791 | 104 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23956-201 | ENSMUST00000157211 | 119 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23713-201 | ENSMUST00000157353 | 70 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Mir1949-201 | ENSMUST00000157434 | 141 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22315-201 | ENSMUST00000158010 | 143 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22615-201 | ENSMUST00000158102 | 70 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22136-201 | ENSMUST00000158751 | 268 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm27588-201 | ENSMUST00000185096 | 263 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | 1700016B01Rik-201 | ENSMUST00000197688 | 270 nt | TSL 1 (best) BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Mir219b-201 | ENSMUST00000198317 | 65 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm44324-201 | ENSMUST00000198517 | 135 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | CT030687.1-201 | ENSMUST00000221854 | 162 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | AC133083.2-201 | ENSMUST00000222826 | 272 nt | TSL 5 BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | AC167140.1-201 | ENSMUST00000224710 | 403 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | AC158521.1-201 | ENSMUST00000225295 | 660 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Olfr1151-202 | ENSMUST00000217376 | 2866 nt | APPRIS P1 TSL 5 BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Slco6c1-201 | ENSMUST00000027569 | 2747 nt | APPRIS P2 TSL 1 (best) BASIC | 1.15 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Olfr805-203 | ENSMUST00000216794 | 3199 nt | APPRIS P1 TSL 5 BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Vmn1r75-202 | ENSMUST00000226622 | 6638 nt | APPRIS P2 BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22003-201 | ENSMUST00000101885 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm11248-201 | ENSMUST00000119568 | 201 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm12045-201 | ENSMUST00000122122 | 573 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Mir1942-201 | ENSMUST00000157274 | 63 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm21797-201 | ENSMUST00000177579 | 543 nt | APPRIS P1 BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24540-201 | ENSMUST00000177627 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm25256-201 | ENSMUST00000177746 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22822-201 | ENSMUST00000177941 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Rnu6-201 | ENSMUST00000178023 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24753-201 | ENSMUST00000178183 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm25829-201 | ENSMUST00000178275 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22092-201 | ENSMUST00000178290 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24486-201 | ENSMUST00000178420 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23217-201 | ENSMUST00000178482 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23092-201 | ENSMUST00000178688 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm21767-201 | ENSMUST00000178689 | 543 nt | APPRIS P1 BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23269-201 | ENSMUST00000178701 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm25709-201 | ENSMUST00000178844 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm25547-201 | ENSMUST00000178877 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24722-201 | ENSMUST00000179017 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22969-201 | ENSMUST00000179018 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22129-201 | ENSMUST00000179034 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24873-201 | ENSMUST00000179101 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23934-201 | ENSMUST00000179111 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22623-201 | ENSMUST00000179244 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm25737-201 | ENSMUST00000179274 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm21822-201 | ENSMUST00000179302 | 543 nt | APPRIS P1 BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22618-201 | ENSMUST00000179376 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24182-201 | ENSMUST00000179419 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24242-201 | ENSMUST00000179440 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm25064-201 | ENSMUST00000179535 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm26295-201 | ENSMUST00000179690 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22823-201 | ENSMUST00000179754 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22360-201 | ENSMUST00000179775 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24978-201 | ENSMUST00000179782 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24967-201 | ENSMUST00000179791 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24267-201 | ENSMUST00000179841 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22288-201 | ENSMUST00000179904 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23410-201 | ENSMUST00000179967 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm24137-201 | ENSMUST00000180055 | 79 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22756-201 | ENSMUST00000180118 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm23512-201 | ENSMUST00000180237 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm26058-201 | ENSMUST00000180294 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22391-201 | ENSMUST00000180356 | 79 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Mir6370-201 | ENSMUST00000183510 | 120 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm29347-201 | ENSMUST00000186695 | 449 nt | TSL 3 BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm28151-201 | ENSMUST00000189404 | 951 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | AC113305.1-201 | ENSMUST00000214664 | 724 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | AC122225.1-201 | ENSMUST00000215641 | 369 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | AC132954.1-201 | ENSMUST00000221017 | 342 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm35558-202 | ENSMUST00000221819 | 499 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Cycs-ps3-201 | ENSMUST00000223240 | 321 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22246-201 | ENSMUST00000082478 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| Rai1 | Q61818 | Gm22306-201 | ENSMUST00000082692 | 107 nt | BASIC | 1.14 | □□□□□ -2.23 | | |