| Hoxa4 | P06798 | Topbp1-ps2-201 | ENSMUST00000191289 | 189 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr428-ps1-201 | ENSMUST00000201135 | 466 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm44655-201 | ENSMUST00000207768 | 423 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AC132437.1-201 | ENSMUST00000218308 | 320 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm46193-201 | ENSMUST00000219399 | 364 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AC167229.1-201 | ENSMUST00000220057 | 469 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AC122465.2-201 | ENSMUST00000221774 | 354 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AC154276.2-201 | ENSMUST00000227707 | 309 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr197-201 | ENSMUST00000080031 | 926 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | mt-Co3-201 | ENSMUST00000082409 | 784 nt | APPRIS P1 BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm26446-201 | ENSMUST00000082455 | 103 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm26164-201 | ENSMUST00000083793 | 104 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm24698-201 | ENSMUST00000083883 | 130 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr110-201 | ENSMUST00000168318 | 1639 nt | APPRIS P1 TSL 2 BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm42536-201 | ENSMUST00000197562 | 1613 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr913-201 | ENSMUST00000081095 | 2441 nt | APPRIS P1 TSL 3 BASIC | 2.38 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm14390-201 | ENSMUST00000117505 | 1695 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Vmn1r78-202 | ENSMUST00000228244 | 7931 nt | APPRIS P1 BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm24280-201 | ENSMUST00000104237 | 134 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm14296-202 | ENSMUST00000108931 | 750 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm25111-201 | ENSMUST00000116686 | 147 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm15037-201 | ENSMUST00000120358 | 259 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm14761-201 | ENSMUST00000121363 | 262 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm22839-201 | ENSMUST00000158436 | 304 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | 2210418O10Rik-204 | ENSMUST00000166464 | 750 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm17162-201 | ENSMUST00000168538 | 473 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Mir5129-201 | ENSMUST00000174938 | 78 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm27220-201 | ENSMUST00000183453 | 262 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm27245-201 | ENSMUST00000184385 | 376 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Mir6372-201 | ENSMUST00000185114 | 109 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm43510-201 | ENSMUST00000197922 | 353 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm44324-201 | ENSMUST00000198517 | 135 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Trav15n-3-201 | ENSMUST00000200498 | 168 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm44844-201 | ENSMUST00000207242 | 336 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr662-ps1-201 | ENSMUST00000210704 | 396 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm18617-201 | ENSMUST00000222311 | 259 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr951-201 | ENSMUST00000078531 | 945 nt | APPRIS P2 BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr954-201 | ENSMUST00000080329 | 945 nt | APPRIS P2 BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm22974-201 | ENSMUST00000083301 | 103 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm13219-201 | ENSMUST00000144870 | 3019 nt | TSL 1 (best) BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm43896-201 | ENSMUST00000203440 | 2032 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | C230088H06Rik-202 | ENSMUST00000181752 | 3010 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Fnd3c2-201 | ENSMUST00000091282 | 3662 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | F8-202 | ENSMUST00000114085 | 7295 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Ccdc7b-201 | ENSMUST00000026912 | 1447 nt | APPRIS P1 TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr1313-203 | ENSMUST00000216071 | 2599 nt | APPRIS P1 TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr1370-204 | ENSMUST00000215806 | 4322 nt | APPRIS P1 TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm9059-201 | ENSMUST00000118319 | 183 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm14852-201 | ENSMUST00000120065 | 647 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm13409-201 | ENSMUST00000122072 | 546 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm22073-201 | ENSMUST00000122668 | 189 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Ppp1r2-ps7-201 | ENSMUST00000140102 | 609 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm24847-201 | ENSMUST00000158032 | 108 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm22257-201 | ENSMUST00000158687 | 301 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Tcrg-C3-201 | ENSMUST00000164407 | 519 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm20450-201 | ENSMUST00000173652 | 147 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm25397-201 | ENSMUST00000176951 | 92 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm23977-201 | ENSMUST00000177871 | 74 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm23725-201 | ENSMUST00000177876 | 107 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm29231-201 | ENSMUST00000179850 | 319 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm43624-201 | ENSMUST00000197368 | 180 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Mir6925-201 | ENSMUST00000197857 | 70 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Mir3970-201 | ENSMUST00000199287 | 90 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr278-ps1-201 | ENSMUST00000205676 | 238 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AC124346.1-201 | ENSMUST00000218539 | 364 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AC163357.1-201 | ENSMUST00000220847 | 233 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Olfr937-201 | ENSMUST00000055567 | 936 nt | APPRIS P1 BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Vmn2r-ps104-201 | ENSMUST00000099416 | 1671 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Sult2a8-203 | ENSMUST00000168252 | 2097 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Adam29-201 | ENSMUST00000053441 | 2726 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm10400-201 | ENSMUST00000203920 | 3835 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Vmn1r178-203 | ENSMUST00000226489 | 2644 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm8978-201 | ENSMUST00000124230 | 2224 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm23422-201 | ENSMUST00000102000 | 107 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Mir669g-201 | ENSMUST00000116809 | 123 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm13510-201 | ENSMUST00000118659 | 429 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm11356-201 | ENSMUST00000118974 | 192 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Rpl30-ps11-201 | ENSMUST00000119630 | 345 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | n-R5s80-201 | ENSMUST00000122596 | 111 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm13942-201 | ENSMUST00000136950 | 325 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm16351-201 | ENSMUST00000142008 | 250 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm24075-201 | ENSMUST00000158175 | 72 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm22675-201 | ENSMUST00000158430 | 104 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm20534-201 | ENSMUST00000172957 | 172 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm25671-201 | ENSMUST00000178612 | 105 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm23307-201 | ENSMUST00000179167 | 105 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm25286-201 | ENSMUST00000179790 | 105 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Ranbp2-ps6-201 | ENSMUST00000183722 | 381 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm28995-201 | ENSMUST00000186625 | 261 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm37029-201 | ENSMUST00000195773 | 239 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AL929417.1-201 | ENSMUST00000214901 | 124 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | AC239878.2-201 | ENSMUST00000224048 | 464 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Skint11-201 | ENSMUST00000079915 | 820 nt | TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Snord42a-201 | ENSMUST00000082606 | 65 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm24764-201 | ENSMUST00000083686 | 199 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Rps24-ps2-201 | ENSMUST00000091375 | 395 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Vmn1r86-201 | ENSMUST00000094828 | 951 nt | APPRIS P2 BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Gm43016-201 | ENSMUST00000196628 | 3150 nt | TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | mt-Nd4-201 | ENSMUST00000082414 | 1378 nt | APPRIS P1 BASIC | 2.35 | □□□□□ -2.03 | | |
| Hoxa4 | P06798 | Vmn1r178-204 | ENSMUST00000226640 | 2282 nt | BASIC | 2.34 | □□□□□ -2.03 | | |