Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm22798-201ENSMUST00000083992 107 ntBASIC2.56□□□□□ -2
Ddx28Q9CWT6 Gm26427-201ENSMUST00000093648 107 ntBASIC2.56□□□□□ -2
Ddx28Q9CWT6 Gm22886-201ENSMUST00000093714 107 ntBASIC2.56□□□□□ -2
Ddx28Q9CWT6 Gm22365-201ENSMUST00000093750 117 ntBASIC2.56□□□□□ -2
Ddx28Q9CWT6 Gm22170-201ENSMUST00000097247 107 ntBASIC2.56□□□□□ -2
Ddx28Q9CWT6 Gm37566-201ENSMUST00000192363 4355 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm23911-201ENSMUST00000104596 134 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm15183-201ENSMUST00000118933 348 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm14269-201ENSMUST00000120455 306 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm14287-201ENSMUST00000121060 117 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm11819-201ENSMUST00000122192 372 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm24627-201ENSMUST00000122764 138 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 C630028M04Rik-201ENSMUST00000141452 3387 ntTSL 1 (best) BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm25373-201ENSMUST00000158156 115 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Esp4-201ENSMUST00000178498 553 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm10105-201ENSMUST00000184601 270 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm28358-202ENSMUST00000189292 223 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm19261-201ENSMUST00000189628 539 ntTSL 2 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm28744-201ENSMUST00000189939 340 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Ighv1-28-201ENSMUST00000192987 351 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm38382-201ENSMUST00000193790 2499 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm37754-201ENSMUST00000194406 452 ntTSL 5 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm36551-201ENSMUST00000196787 300 ntTSL 5 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm44399-201ENSMUST00000205043 226 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Olfr857-202ENSMUST00000212013 2306 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Olfr1208-203ENSMUST00000214297 2844 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Olfr953-ps1-201ENSMUST00000214463 892 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Olfr1111-202ENSMUST00000214492 1616 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 AC155923.1-201ENSMUST00000215676 356 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 RMST_1.1-206ENSMUST00000218255 309 ntTSL 3 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 1700015C15Rik-201ENSMUST00000221465 374 ntTSL 1 (best) BASIC2.55□□□□□ -2
Ddx28Q9CWT6 AC161758.2-201ENSMUST00000228513 218 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 1700010L04Rik-201ENSMUST00000032872 330 ntTSL 5 BASIC2.55□□□□□ -2
Ddx28Q9CWT6 Gm22249-201ENSMUST00000082485 136 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 Snord14d-201ENSMUST00000083424 86 ntBASIC2.55□□□□□ -2
Ddx28Q9CWT6 AC124561.2-201ENSMUST00000226657 1973 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Traj44-201ENSMUST00000103698 61 ntAPPRIS P1 BASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm25466-201ENSMUST00000103995 132 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm25168-201ENSMUST00000104189 132 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Snord98-201ENSMUST00000116819 65 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Defa-ps13-201ENSMUST00000120695 204 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm12876-201ENSMUST00000120975 408 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm15466-201ENSMUST00000122299 333 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm25325-201ENSMUST00000122559 86 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 4930511O05Rik-201ENSMUST00000155912 391 ntTSL 1 (best) BASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm23435-201ENSMUST00000157183 156 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm24997-201ENSMUST00000157910 105 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm26215-201ENSMUST00000158584 139 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Snord53-201ENSMUST00000175146 78 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Mir195b-201ENSMUST00000184814 97 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm37128-201ENSMUST00000192599 232 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Olfr1304-ps1-201ENSMUST00000208032 189 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Defa-ps13-202ENSMUST00000212360 204 ntTSL 1 (best) BASIC2.54□□□□□ -2
Ddx28Q9CWT6 AC164567.2-201ENSMUST00000219363 445 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 AC164304.1-201ENSMUST00000226920 272 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Sva-201ENSMUST00000024059 651 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm22364-201ENSMUST00000083097 98 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Snord104-201ENSMUST00000083192 70 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Defb41-201ENSMUST00000088463 467 ntTSL 1 (best) BASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm25207-201ENSMUST00000093745 107 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 BC100530-201ENSMUST00000096089 619 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
Ddx28Q9CWT6 Olfr1156-201ENSMUST00000099842 1076 ntAPPRIS P1 BASIC2.54□□□□□ -2
Ddx28Q9CWT6 Olfr1309-205ENSMUST00000216948 5168 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm44133-202ENSMUST00000204450 2586 ntBASIC2.54□□□□□ -2
Ddx28Q9CWT6 Gm37941-201ENSMUST00000192170 2309 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Olfr623-202ENSMUST00000213840 3980 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
Ddx28Q9CWT6 Igkv5-39-201ENSMUST00000103370 287 ntAPPRIS P1 BASIC2.53□□□□□ -2
Ddx28Q9CWT6 Rpl23a-ps6-201ENSMUST00000119466 468 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm13903-201ENSMUST00000120945 193 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm12155-201ENSMUST00000121267 160 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm13409-201ENSMUST00000122072 546 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Rpl30-ps9-201ENSMUST00000122265 345 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm16218-201ENSMUST00000155424 388 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm25827-201ENSMUST00000157089 107 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm24443-201ENSMUST00000157242 132 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm24056-201ENSMUST00000158617 146 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm24878-201ENSMUST00000158782 104 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm23660-201ENSMUST00000178362 79 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm24088-201ENSMUST00000179100 79 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm43901-201ENSMUST00000203247 453 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm45445-201ENSMUST00000209586 232 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm35732-201ENSMUST00000221737 356 ntTSL 3 BASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm39473-201ENSMUST00000223498 522 ntTSL 3 BASIC2.53□□□□□ -2
Ddx28Q9CWT6 AC117202.2-201ENSMUST00000226491 1101 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Gm10337-201ENSMUST00000096145 165 ntAPPRIS P1 BASIC2.53□□□□□ -2
Ddx28Q9CWT6 AC164164.1-201ENSMUST00000223245 2340 ntBASIC2.53□□□□□ -2
Ddx28Q9CWT6 Snora36b-201ENSMUST00000104383 132 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm15896-201ENSMUST00000118045 440 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm16021-201ENSMUST00000121176 219 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 DQ267100-201ENSMUST00000122600 72 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm23391-201ENSMUST00000157579 104 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm23586-201ENSMUST00000157657 123 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm23588-201ENSMUST00000157659 99 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm23557-201ENSMUST00000157820 138 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm23641-201ENSMUST00000157857 101 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm22389-201ENSMUST00000158193 301 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Ear10-201ENSMUST00000159175 678 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm15900-201ENSMUST00000161584 342 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Gm17187-201ENSMUST00000164622 410 ntBASIC2.52□□□□□ -2.01
Ddx28Q9CWT6 Vmn1r-ps83-201ENSMUST00000172677 705 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 76,532 protein–RNA pairs in 83.5 ms