Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 A330044P14Rik-201ENSMUST00000176108 2706 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm2042-207ENSMUST00000181326 2440 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
Rnf40Q3U319 Postn-204ENSMUST00000117373 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
Rnf40Q3U319 Defb43-201ENSMUST00000100491 408 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm26421-201ENSMUST00000104279 132 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Snord89-201ENSMUST00000104516 110 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Psmb7-ps2-201ENSMUST00000118546 820 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm12074-201ENSMUST00000120189 219 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm13488-201ENSMUST00000120419 179 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm22106-201ENSMUST00000122544 127 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm22850-201ENSMUST00000157714 82 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 4930570N18Rik-201ENSMUST00000159273 332 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm20438-201ENSMUST00000174441 329 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm28924-201ENSMUST00000190012 241 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 A930014E01Rik-201ENSMUST00000194572 330 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm43206-201ENSMUST00000197990 114 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Igkv13-57-1-201ENSMUST00000198063 305 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 AC123064.1-201ENSMUST00000218950 406 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 CT025579.1-201ENSMUST00000223779 366 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm22248-201ENSMUST00000082482 150 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Lrp1b-201ENSMUST00000052550 16294 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Rnf40Q3U319 P2ry10-202ENSMUST00000118666 2757 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm38235-201ENSMUST00000194600 4952 ntBASIC4.67□□□□□ -1.66
Rnf40Q3U319 Nlrp4f-201ENSMUST00000037372 3527 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
Rnf40Q3U319 Gm32444-201ENSMUST00000195147 3511 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 Cfh-206ENSMUST00000192880 3746 ntTSL 5 BASIC4.66□□□□□ -1.66
Rnf40Q3U319 Gm12808-201ENSMUST00000120597 404 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 Gm26160-201ENSMUST00000158965 63 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 AC107757.3-201ENSMUST00000226312 535 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 Gm25789-201ENSMUST00000083294 76 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 Txndc9-204ENSMUST00000193832 3472 ntTSL 2 BASIC4.66□□□□□ -1.66
Rnf40Q3U319 Gm43824-201ENSMUST00000199042 2588 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
Rnf40Q3U319 Olfr843-202ENSMUST00000214019 7499 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
Rnf40Q3U319 Gm8473-201ENSMUST00000176697 1885 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 Gm26814-201ENSMUST00000181178 4149 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 Slco1a4-203ENSMUST00000165990 3823 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
Rnf40Q3U319 Vmn1r216-203ENSMUST00000228389 10213 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
Rnf40Q3U319 Gm45039-201ENSMUST00000209181 3477 ntBASIC4.66□□□□□ -1.66
Rnf40Q3U319 Kynu-202ENSMUST00000050511 2778 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
Rnf40Q3U319 Olfr646-202ENSMUST00000214099 3778 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
Rnf40Q3U319 Vmn1r43-205ENSMUST00000228709 12646 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
Rnf40Q3U319 Macc1-203ENSMUST00000221917 4272 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
Rnf40Q3U319 Gm42717-201ENSMUST00000197309 3463 ntBASIC4.65□□□□□ -1.66
Rnf40Q3U319 Pkhd1l1-203ENSMUST00000209244 12949 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
Rnf40Q3U319 Gm14400-201ENSMUST00000117234 2135 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm11786-201ENSMUST00000120799 155 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm6025-201ENSMUST00000121517 201 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm10059-201ENSMUST00000131139 171 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm26360-201ENSMUST00000158872 103 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm44308-201ENSMUST00000197080 99 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm44521-201ENSMUST00000206469 217 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm44816-201ENSMUST00000206666 477 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm6049-201ENSMUST00000222369 458 ntBASIC4.65□□□□□ -1.67
Rnf40Q3U319 Cul4b-203ENSMUST00000115118 3344 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.67
Rnf40Q3U319 Gm14696-201ENSMUST00000144294 3976 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm830-201ENSMUST00000142458 3502 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm22472-201ENSMUST00000104115 134 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm14601-201ENSMUST00000120892 236 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm12685-201ENSMUST00000121702 214 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm23101-201ENSMUST00000157550 137 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm25456-201ENSMUST00000157952 109 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm22612-201ENSMUST00000158293 101 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm27445-201ENSMUST00000184484 72 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm37421-201ENSMUST00000193088 132 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm8069-201ENSMUST00000197887 154 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm43408-201ENSMUST00000198263 440 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm15235-201ENSMUST00000200572 194 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm43264-201ENSMUST00000202284 325 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 AC126939.3-201ENSMUST00000226061 166 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Mir31-201ENSMUST00000083474 106 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Cwf19l2-201ENSMUST00000027027 4446 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
Rnf40Q3U319 CAAA01194877.1-201ENSMUST00000213137 4233 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm37742-201ENSMUST00000193263 3979 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Gm43327-201ENSMUST00000199285 4055 ntBASIC4.64□□□□□ -1.67
Rnf40Q3U319 Trim30d-202ENSMUST00000071069 3282 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
Rnf40Q3U319 AC159625.1-201ENSMUST00000220994 2625 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Olfr235-202ENSMUST00000207969 2447 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
Rnf40Q3U319 Gm22273-201ENSMUST00000104040 132 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Gm23322-201ENSMUST00000104464 167 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Gm3086-201ENSMUST00000110560 620 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
Rnf40Q3U319 Mir1188-201ENSMUST00000116756 120 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Gm34176-201ENSMUST00000192621 474 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Gm20056-201ENSMUST00000194813 519 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Gm23510-201ENSMUST00000083083 163 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Rnase12-201ENSMUST00000089798 545 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
Rnf40Q3U319 Olfr116-202ENSMUST00000216128 4477 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
Rnf40Q3U319 Gm8995-201ENSMUST00000184842 7280 ntBASIC4.63□□□□□ -1.67
Rnf40Q3U319 Zfp616-201ENSMUST00000074813 5014 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Igkv10-94-201ENSMUST00000103330 347 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Ighv1-36-201ENSMUST00000103513 348 ntAPPRIS ALT2 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm26011-201ENSMUST00000104410 104 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm24892-201ENSMUST00000122747 104 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm11534-201ENSMUST00000125956 204 ntTSL 3 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Nell1os-203ENSMUST00000152166 410 ntTSL 2 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm25882-201ENSMUST00000157784 85 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Trav6-5-202ENSMUST00000183488 335 ntAPPRIS ALT2 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm37791-201ENSMUST00000195081 286 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm26265-202ENSMUST00000196326 133 ntBASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm42891-201ENSMUST00000199340 281 ntTSL 5 BASIC4.62□□□□□ -1.67
Rnf40Q3U319 Gm45687-201ENSMUST00000209454 155 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 76,532 protein–RNA pairs in 81.3 ms