Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm27611-201ENSMUST00000184690 108 ntBASIC4.14□□□□□ -1.75
RaraP11416 Gm43155-201ENSMUST00000202661 494 ntBASIC4.14□□□□□ -1.75
RaraP11416 Gm44887-201ENSMUST00000208980 178 ntBASIC4.14□□□□□ -1.75
RaraP11416 CT485607.2-201ENSMUST00000214650 91 ntBASIC4.14□□□□□ -1.75
RaraP11416 Gm3829-201ENSMUST00000222362 619 ntBASIC4.14□□□□□ -1.75
RaraP11416 Gm24148-201ENSMUST00000082762 80 ntBASIC4.14□□□□□ -1.75
RaraP11416 Tfpi-202ENSMUST00000090732 3576 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
RaraP11416 Cyp3a13-201ENSMUST00000031741 2956 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
RaraP11416 Pik3c2a-201ENSMUST00000170430 8044 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
RaraP11416 AC117226.1-201ENSMUST00000221635 3737 ntBASIC4.13□□□□□ -1.75
RaraP11416 Ntrk3-201ENSMUST00000039431 19703 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
RaraP11416 Cd59b-204ENSMUST00000111132 436 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
RaraP11416 Gm13155-201ENSMUST00000119277 646 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm8178-201ENSMUST00000121570 646 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm26027-201ENSMUST00000122725 268 ntBASIC4.13□□□□□ -1.75
RaraP11416 8030453O22Rik-201ENSMUST00000128919 370 ntTSL 3 BASIC4.13□□□□□ -1.75
RaraP11416 Gm23554-201ENSMUST00000157818 110 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm22606-201ENSMUST00000158290 103 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm7241-201ENSMUST00000159853 357 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm3646-201ENSMUST00000171319 352 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
RaraP11416 Gm26460-201ENSMUST00000175061 126 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm8790-201ENSMUST00000194108 322 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm43991-201ENSMUST00000203751 274 ntBASIC4.13□□□□□ -1.75
RaraP11416 AC100590.2-201ENSMUST00000219028 215 ntBASIC4.13□□□□□ -1.75
RaraP11416 AC093316.2-201ENSMUST00000220015 172 ntTSL 5 BASIC4.13□□□□□ -1.75
RaraP11416 Gm23239-201ENSMUST00000083006 181 ntBASIC4.13□□□□□ -1.75
RaraP11416 n-R5s54-201ENSMUST00000083837 112 ntBASIC4.13□□□□□ -1.75
RaraP11416 Gm37742-201ENSMUST00000193263 3979 ntBASIC4.13□□□□□ -1.75
RaraP11416 Hyal6-201ENSMUST00000031690 3452 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
RaraP11416 Skint4-202ENSMUST00000106564 3997 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
RaraP11416 Skint4-204ENSMUST00000106566 3997 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
RaraP11416 Gm37298-201ENSMUST00000193770 3868 ntBASIC4.12□□□□□ -1.75
RaraP11416 Gm25985-201ENSMUST00000122677 107 ntBASIC4.12□□□□□ -1.75
RaraP11416 Gm22883-201ENSMUST00000157376 106 ntBASIC4.12□□□□□ -1.75
RaraP11416 Gm25935-201ENSMUST00000178746 107 ntBASIC4.12□□□□□ -1.75
RaraP11416 Trdv1-202ENSMUST00000187163 334 ntAPPRIS ALT2 BASIC4.12□□□□□ -1.75
RaraP11416 Gm38171-201ENSMUST00000195716 478 ntTSL 3 BASIC4.12□□□□□ -1.75
RaraP11416 Gm34599-201ENSMUST00000198924 288 ntTSL 3 BASIC4.12□□□□□ -1.75
RaraP11416 AC168880.2-201ENSMUST00000224488 201 ntBASIC4.12□□□□□ -1.75
RaraP11416 Snora31-201ENSMUST00000083213 130 ntBASIC4.12□□□□□ -1.75
RaraP11416 Snord14d-201ENSMUST00000083424 86 ntBASIC4.12□□□□□ -1.75
RaraP11416 Olfr847-202ENSMUST00000216839 2385 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
RaraP11416 Gm10287-202ENSMUST00000180599 4059 ntBASIC4.12□□□□□ -1.75
RaraP11416 Gm5724-201ENSMUST00000148411 2449 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
RaraP11416 Lrp1b-201ENSMUST00000052550 16294 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RaraP11416 Zfp518a-201ENSMUST00000050092 6840 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
RaraP11416 Gm37899-201ENSMUST00000193116 8717 ntBASIC4.11□□□□□ -1.75
RaraP11416 Trav8-1-201ENSMUST00000103643 328 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
RaraP11416 Gm15714-201ENSMUST00000117168 250 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm22988-201ENSMUST00000122759 144 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm15517-201ENSMUST00000124863 251 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RaraP11416 Gm11534-201ENSMUST00000125956 204 ntTSL 3 BASIC4.11□□□□□ -1.75
RaraP11416 Gm24961-201ENSMUST00000157918 184 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm7582-201ENSMUST00000160831 603 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gt(ROSA)26Sor-204ENSMUST00000167415 551 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RaraP11416 Gm24086-201ENSMUST00000175171 98 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm26337-201ENSMUST00000178000 79 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm23922-201ENSMUST00000178792 79 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm24657-201ENSMUST00000180085 79 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm22996-201ENSMUST00000180236 79 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm29380-201ENSMUST00000185898 416 ntTSL 5 BASIC4.11□□□□□ -1.75
RaraP11416 Gm17829-201ENSMUST00000219782 344 ntBASIC4.11□□□□□ -1.75
RaraP11416 Cdrt4-201ENSMUST00000035854 723 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RaraP11416 1700006A11Rik-201ENSMUST00000029598 2161 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RaraP11416 Gm37672-201ENSMUST00000192682 4014 ntBASIC4.11□□□□□ -1.75
RaraP11416 Gm14015-201ENSMUST00000130634 3949 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RaraP11416 Vmn2r38-201ENSMUST00000108554 3663 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
RaraP11416 Gm13307-201ENSMUST00000141375 493 ntTSL 5 BASIC4.1□□□□□ -1.75
RaraP11416 Gm23331-201ENSMUST00000157423 108 ntBASIC4.1□□□□□ -1.75
RaraP11416 Gm26022-201ENSMUST00000158663 108 ntBASIC4.1□□□□□ -1.75
RaraP11416 Krtap27-1-201ENSMUST00000165580 646 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
RaraP11416 Gm20693-201ENSMUST00000177431 211 ntBASIC4.1□□□□□ -1.75
RaraP11416 Mir6960-201ENSMUST00000183449 61 ntBASIC4.1□□□□□ -1.75
RaraP11416 Gm29574-201ENSMUST00000186226 696 ntBASIC4.1□□□□□ -1.75
RaraP11416 Gm29347-201ENSMUST00000186695 449 ntTSL 3 BASIC4.1□□□□□ -1.75
RaraP11416 Gm5829-201ENSMUST00000191383 351 ntBASIC4.1□□□□□ -1.75
RaraP11416 Trbv6-201ENSMUST00000193743 276 ntBASIC4.1□□□□□ -1.75
RaraP11416 Gm42774-201ENSMUST00000198854 283 ntBASIC4.1□□□□□ -1.75
RaraP11416 1700126H18Rik-201ENSMUST00000201903 405 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
RaraP11416 Klk1b18-ps-201ENSMUST00000205780 167 ntBASIC4.1□□□□□ -1.75
RaraP11416 Vmn2r27-201ENSMUST00000100968 2574 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
RaraP11416 Vmn1r74-202ENSMUST00000228471 6608 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
RaraP11416 Mmrn1-203ENSMUST00000204333 4472 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
RaraP11416 Olfr790-202ENSMUST00000203966 2602 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
RaraP11416 Vmn1r81-205ENSMUST00000228764 13763 ntAPPRIS P2 BASIC4.09□□□□□ -1.75
RaraP11416 Olfr194-203ENSMUST00000216519 3705 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
RaraP11416 Olfr1228-202ENSMUST00000215447 3223 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
RaraP11416 Gm32647-201ENSMUST00000206116 3288 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
RaraP11416 Gm24403-201ENSMUST00000104616 130 ntBASIC4.09□□□□□ -1.75
RaraP11416 Gm9003-201ENSMUST00000121810 482 ntBASIC4.09□□□□□ -1.75
RaraP11416 Gm24739-201ENSMUST00000158855 292 ntBASIC4.09□□□□□ -1.75
RaraP11416 Gm28500-201ENSMUST00000190286 151 ntBASIC4.09□□□□□ -1.75
RaraP11416 Igkv13-57-1-201ENSMUST00000198063 305 ntBASIC4.09□□□□□ -1.75
RaraP11416 Eif4e-206ENSMUST00000200239 526 ntTSL 5 BASIC4.09□□□□□ -1.75
RaraP11416 Gm44099-201ENSMUST00000203299 112 ntBASIC4.09□□□□□ -1.75
RaraP11416 Gm24626-201ENSMUST00000082621 161 ntBASIC4.09□□□□□ -1.75
RaraP11416 Gm24705-201ENSMUST00000082808 107 ntBASIC4.09□□□□□ -1.75
RaraP11416 Gm25204-201ENSMUST00000082843 106 ntBASIC4.09□□□□□ -1.75
RaraP11416 Olfr1469-202ENSMUST00000216910 4106 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
RaraP11416 Cfap97-206ENSMUST00000164504 4521 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
Retrieved 100 of 76,532 protein–RNA pairs in 100.5 ms