Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gabra2-203ENSMUST00000197284 5852 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
ShhQ62226 Olfr17-202ENSMUST00000210568 3666 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
ShhQ62226 Gm2042-201ENSMUST00000110145 1894 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
ShhQ62226 Vmn2r65-201ENSMUST00000044583 2538 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
ShhQ62226 Mir701-201ENSMUST00000102208 109 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm12235-201ENSMUST00000118596 170 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm15936-201ENSMUST00000118706 460 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm13903-201ENSMUST00000120945 193 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm14100-201ENSMUST00000125575 651 ntTSL 3 BASIC3.08□□□□□ -1.92
ShhQ62226 Gm14562-201ENSMUST00000129885 543 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Nell1os-201ENSMUST00000134584 489 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
ShhQ62226 Gm26100-201ENSMUST00000157245 127 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm24847-201ENSMUST00000158032 108 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm23579-201ENSMUST00000158528 103 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm10772-201ENSMUST00000167981 255 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
ShhQ62226 Gm44941-201ENSMUST00000204216 627 ntTSL 2 BASIC3.08□□□□□ -1.92
ShhQ62226 AC124537.1-201ENSMUST00000222890 159 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm22247-201ENSMUST00000082476 131 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Gm26164-201ENSMUST00000083793 104 ntBASIC3.08□□□□□ -1.92
ShhQ62226 AC121844.2-201ENSMUST00000219067 2066 ntBASIC3.08□□□□□ -1.92
ShhQ62226 Olfr837-202ENSMUST00000215699 3758 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
ShhQ62226 Vmn1r-ps125-201ENSMUST00000117767 290 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm15029-201ENSMUST00000119742 199 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm8121-201ENSMUST00000153583 499 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm17186-201ENSMUST00000171742 456 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Mir195b-201ENSMUST00000184814 97 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm9402-201ENSMUST00000196849 388 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm39038-201ENSMUST00000206774 355 ntTSL 3 BASIC3.07□□□□□ -1.92
ShhQ62226 Gm45403-201ENSMUST00000209453 276 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm35405-201ENSMUST00000218754 400 ntBASIC3.07□□□□□ -1.92
ShhQ62226 AC155167.3-201ENSMUST00000226349 217 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm22806-201ENSMUST00000082738 136 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Gm22353-201ENSMUST00000083918 136 ntBASIC3.07□□□□□ -1.92
ShhQ62226 Vmn1r71-208ENSMUST00000228374 3717 ntAPPRIS P2 BASIC3.07□□□□□ -1.92
ShhQ62226 Clhc1-204ENSMUST00000208530 2062 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
ShhQ62226 Cfh-202ENSMUST00000111976 4365 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
ShhQ62226 Olfr124-204ENSMUST00000217365 4365 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
ShhQ62226 Cfh-201ENSMUST00000066859 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
ShhQ62226 Gm3259-201ENSMUST00000101015 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
ShhQ62226 Gm16216-201ENSMUST00000118970 1111 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Gm14919-201ENSMUST00000120839 390 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Gm12858-201ENSMUST00000121913 208 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Gm11816-201ENSMUST00000142744 353 ntTSL 3 BASIC3.06□□□□□ -1.92
ShhQ62226 Gm3848-202ENSMUST00000151564 301 ntTSL 3 BASIC3.06□□□□□ -1.92
ShhQ62226 Gm22521-201ENSMUST00000158272 134 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Rpl26-ps4-201ENSMUST00000170279 438 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Gm24085-201ENSMUST00000175172 116 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Gm28650-201ENSMUST00000188413 411 ntBASIC3.06□□□□□ -1.92
ShhQ62226 1700010I02Rik-202ENSMUST00000188525 430 ntTSL 3 BASIC3.06□□□□□ -1.92
ShhQ62226 Gm28954-201ENSMUST00000190031 437 ntTSL 5 BASIC3.06□□□□□ -1.92
ShhQ62226 Gm38361-201ENSMUST00000193419 458 ntTSL 5 BASIC3.06□□□□□ -1.92
ShhQ62226 Gm31942-202ENSMUST00000195375 437 ntTSL 5 BASIC3.06□□□□□ -1.92
ShhQ62226 Olfr439-ps1-201ENSMUST00000204679 307 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Olfr136-203ENSMUST00000208539 1773 ntAPPRIS P1 TSL 3 BASIC3.06□□□□□ -1.92
ShhQ62226 Gm44811-201ENSMUST00000209120 228 ntBASIC3.06□□□□□ -1.92
ShhQ62226 AC164297.3-201ENSMUST00000224238 94 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Rgs13-201ENSMUST00000052375 1510 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
ShhQ62226 Gm23679-201ENSMUST00000083161 119 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Gm23454-201ENSMUST00000083332 133 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Gm23042-201ENSMUST00000083866 101 ntBASIC3.06□□□□□ -1.92
ShhQ62226 Olfr394-203ENSMUST00000216608 5628 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
ShhQ62226 Lztfl1-201ENSMUST00000026274 4070 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
ShhQ62226 Zfp991-201ENSMUST00000084149 2813 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
ShhQ62226 Ccr3-201ENSMUST00000039171 3272 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
ShhQ62226 Pak3-205ENSMUST00000112868 8163 ntAPPRIS P3 TSL 5 BASIC3.05□□□□□ -1.92
ShhQ62226 Glra2-201ENSMUST00000058787 3150 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
ShhQ62226 Vmn1r69-201ENSMUST00000163658 2558 ntAPPRIS P2 BASIC3.05□□□□□ -1.92
ShhQ62226 Gm7123-201ENSMUST00000117647 213 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm13122-201ENSMUST00000118380 453 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm14001-201ENSMUST00000118847 247 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm11904-201ENSMUST00000120562 248 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm14581-201ENSMUST00000121726 198 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm12924-201ENSMUST00000121747 318 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm23234-201ENSMUST00000157304 134 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm26468-201ENSMUST00000158644 106 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm20513-201ENSMUST00000174074 537 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
ShhQ62226 Mir3965-201ENSMUST00000175570 69 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Vmn2r-ps34-201ENSMUST00000177433 904 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Vmn2r-ps18-201ENSMUST00000177972 380 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Ranbp2-ps6-201ENSMUST00000183722 381 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm28534-201ENSMUST00000187744 676 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm32033-201ENSMUST00000193483 339 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm43704-201ENSMUST00000196164 496 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm43402-201ENSMUST00000197159 159 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Obox4-ps25-201ENSMUST00000199090 210 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm26379-202ENSMUST00000200225 132 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm44844-201ENSMUST00000207242 336 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm45513-201ENSMUST00000210228 376 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Gm22245-201ENSMUST00000082479 103 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Slco6c1-202ENSMUST00000189547 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
ShhQ62226 Gm42446-201ENSMUST00000199783 3284 ntBASIC3.05□□□□□ -1.92
ShhQ62226 Rictor-201ENSMUST00000061656 9312 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
ShhQ62226 Olfr513-202ENSMUST00000214670 2029 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
ShhQ62226 Zfp729b-201ENSMUST00000012873 4835 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
ShhQ62226 Olfr164-202ENSMUST00000216157 2792 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
ShhQ62226 Olfr968-202ENSMUST00000216458 4630 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
ShhQ62226 Gm8011-201ENSMUST00000172163 1751 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
ShhQ62226 2810403D21Rik-202ENSMUST00000124329 1660 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ShhQ62226 Gm37320-201ENSMUST00000192781 4953 ntBASIC3.04□□□□□ -1.92
ShhQ62226 Olfr68-202ENSMUST00000216811 4093 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
Retrieved 100 of 76,532 protein–RNA pairs in 76.8 ms