Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Defa-ps9-201ENSMUST00000118264 276 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm12335-201ENSMUST00000119738 327 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm15263-201ENSMUST00000121556 642 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm14846-201ENSMUST00000121868 216 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm13092-201ENSMUST00000136346 260 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm23781-201ENSMUST00000157940 308 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm25450-201ENSMUST00000179144 107 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Scgb2b28-ps-201ENSMUST00000188974 337 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm28500-201ENSMUST00000190286 151 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 AC160134.1-201ENSMUST00000213450 551 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 AC129219.3-201ENSMUST00000223790 196 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 AC126253.2-201ENSMUST00000226518 205 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Mir133a-2-201ENSMUST00000083526 104 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm42552-201ENSMUST00000196754 4497 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm4788-201ENSMUST00000027612 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Trim56Q80VI1 Olfr843-202ENSMUST00000214019 7499 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm21033-201ENSMUST00000208590 2608 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Gm9343-201ENSMUST00000209016 2609 ntBASIC4.42□□□□□ -1.7
Trim56Q80VI1 Skint2-203ENSMUST00000106560 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Nebl-202ENSMUST00000124270 8079 ntTSL 5 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Olfr1484-204ENSMUST00000216014 3842 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Olfr111-203ENSMUST00000215424 2548 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Vmn1r47-203ENSMUST00000227811 6792 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Vmn1r45-205ENSMUST00000227571 2757 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Olfr112-201ENSMUST00000085548 3103 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Igkv17-121-201ENSMUST00000103315 350 ntAPPRIS ALT2 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm24172-201ENSMUST00000104127 117 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm11572-201ENSMUST00000119164 120 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm15223-201ENSMUST00000120989 826 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 4930517O19Rik-202ENSMUST00000145018 571 ntTSL 3 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm25384-201ENSMUST00000157807 105 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm22654-201ENSMUST00000157874 105 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm24998-201ENSMUST00000157908 89 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm22538-201ENSMUST00000158169 299 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm16303-201ENSMUST00000161498 390 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Obox3-ps7-201ENSMUST00000176465 410 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm25235-201ENSMUST00000179933 107 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm28755-201ENSMUST00000185773 199 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm29140-201ENSMUST00000190187 476 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Igkv13-71-1-201ENSMUST00000199934 264 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm45380-201ENSMUST00000210465 315 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm35732-201ENSMUST00000221737 356 ntTSL 3 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Rpl31-ps1-201ENSMUST00000085128 378 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Nlrp4d-201ENSMUST00000182420 2946 ntBASIC4.41□□□□□ -1.7
Trim56Q80VI1 Gm20557-201ENSMUST00000192871 2794 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Fancb-201ENSMUST00000057150 2422 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
Trim56Q80VI1 Olfr1042-202ENSMUST00000215624 5096 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
Trim56Q80VI1 Zfp846-201ENSMUST00000060063 1626 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
Trim56Q80VI1 E430014B02Rik-201ENSMUST00000194215 3156 ntBASIC4.4□□□□□ -1.7
Trim56Q80VI1 Gm24423-201ENSMUST00000101982 106 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Mir541-201ENSMUST00000102097 90 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Igkv3-7-201ENSMUST00000103399 299 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm23697-201ENSMUST00000103897 110 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm13541-201ENSMUST00000119519 283 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Defa-ps8-201ENSMUST00000120972 279 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm11456-201ENSMUST00000121070 256 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Rps15a-ps3-201ENSMUST00000121072 395 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm12155-201ENSMUST00000121267 160 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm13793-201ENSMUST00000124214 438 ntTSL 2 BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Pfdn4-205ENSMUST00000136839 452 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm23956-201ENSMUST00000157211 119 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm23231-201ENSMUST00000157299 104 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm24505-201ENSMUST00000157682 126 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Ifi206-202ENSMUST00000169797 429 ntTSL 5 BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm27903-201ENSMUST00000175482 126 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm22308-201ENSMUST00000177609 107 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm29232-201ENSMUST00000189100 297 ntTSL 5 BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm37343-201ENSMUST00000192542 111 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm44010-201ENSMUST00000204432 331 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 AC125379.1-201ENSMUST00000221928 111 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 CT485612.4-201ENSMUST00000223405 250 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm18441-201ENSMUST00000223539 617 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Ly6a-201ENSMUST00000023248 819 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm10542-201ENSMUST00000097586 273 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Olfr1129-202ENSMUST00000213315 2255 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Olfr1196-203ENSMUST00000216977 4225 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
Trim56Q80VI1 Gm37236-201ENSMUST00000193670 3249 ntBASIC4.4□□□□□ -1.71
Trim56Q80VI1 Olfr1104-202ENSMUST00000214857 2693 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
Trim56Q80VI1 Olfr110-201ENSMUST00000168318 1639 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
Trim56Q80VI1 Csn1s2b-202ENSMUST00000101057 1668 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm2042-207ENSMUST00000181326 2440 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm15162-201ENSMUST00000119325 283 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm23602-201ENSMUST00000157258 132 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm22145-201ENSMUST00000157396 148 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm25220-201ENSMUST00000157546 95 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Mir6383-201ENSMUST00000184545 116 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm18429-201ENSMUST00000198707 421 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 CT010506.3-201ENSMUST00000223699 410 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm22806-201ENSMUST00000082738 136 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm22353-201ENSMUST00000083918 136 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm37626-201ENSMUST00000194332 4563 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm12080-201ENSMUST00000119821 1883 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Gm42447-201ENSMUST00000200102 2903 ntBASIC4.39□□□□□ -1.71
Trim56Q80VI1 Has2-201ENSMUST00000050544 4237 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Trim56Q80VI1 A430106G13Rik-201ENSMUST00000182158 3388 ntBASIC4.38□□□□□ -1.71
Trim56Q80VI1 Vmn2r49-201ENSMUST00000108550 2559 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
Trim56Q80VI1 Vmn2r47-201ENSMUST00000170131 2559 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
Trim56Q80VI1 Olfr64-201ENSMUST00000081748 5001 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
Trim56Q80VI1 Vmn1r77-203ENSMUST00000227320 8308 ntAPPRIS P2 BASIC4.38□□□□□ -1.71
Trim56Q80VI1 Gm25833-201ENSMUST00000104137 133 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 76,532 protein–RNA pairs in 105 ms