Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mir3969-201ENSMUST00000197106 92 ntBASIC4.89□□□□□ -1.63
Rnf40Q3U319 Gm44132-201ENSMUST00000205142 151 ntBASIC4.89□□□□□ -1.63
Rnf40Q3U319 Gm39147-201ENSMUST00000211376 465 ntBASIC4.89□□□□□ -1.63
Rnf40Q3U319 Gm45777-201ENSMUST00000213009 301 ntBASIC4.89□□□□□ -1.63
Rnf40Q3U319 AC122332.1-201ENSMUST00000214384 285 ntBASIC4.89□□□□□ -1.63
Rnf40Q3U319 Mir337-201ENSMUST00000083592 97 ntBASIC4.89□□□□□ -1.63
Rnf40Q3U319 AC156025.1-201ENSMUST00000223597 3551 ntBASIC4.89□□□□□ -1.63
Rnf40Q3U319 Olfr699-202ENSMUST00000215952 3669 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
Rnf40Q3U319 A930017M01Rik-205ENSMUST00000227721 4167 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm24230-201ENSMUST00000104313 129 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm25753-201ENSMUST00000116792 121 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm13537-201ENSMUST00000120467 267 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm25267-201ENSMUST00000158522 63 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm20397-201ENSMUST00000174520 362 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Mir1957b-201ENSMUST00000184608 123 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm27355-201ENSMUST00000185045 128 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm28103-201ENSMUST00000188392 416 ntTSL 5 BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm28314-201ENSMUST00000191276 345 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm28137-201ENSMUST00000191478 416 ntTSL 5 BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm38250-201ENSMUST00000192691 766 ntTSL 3 BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm44352-201ENSMUST00000196358 110 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm43853-201ENSMUST00000197162 301 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm18982-201ENSMUST00000198118 529 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm43993-201ENSMUST00000203972 247 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm18470-201ENSMUST00000207467 420 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm18464-201ENSMUST00000207803 420 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm18461-201ENSMUST00000208421 420 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 AC145731.1-201ENSMUST00000214083 344 ntTSL 5 BASIC4.88□□□□□ -1.63
Rnf40Q3U319 CT009696.2-201ENSMUST00000216668 432 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 AC147545.1-201ENSMUST00000227528 108 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Defa34-201ENSMUST00000075268 375 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm24355-201ENSMUST00000082858 122 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm23038-201ENSMUST00000083873 104 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Defa5-201ENSMUST00000098892 376 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Gm37099-201ENSMUST00000191902 3451 ntBASIC4.88□□□□□ -1.63
Rnf40Q3U319 Lipo5-201ENSMUST00000156818 2003 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Zfp300-201ENSMUST00000040667 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Zfp788-201ENSMUST00000045720 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Olfr575-203ENSMUST00000216420 3500 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
Rnf40Q3U319 Olfr145-202ENSMUST00000213688 6691 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Vmn1r80-204ENSMUST00000227471 6368 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 9430018G01Rik-201ENSMUST00000203260 3758 ntTSL 5 BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Vmn2r116-201ENSMUST00000164856 2571 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Cftr-201ENSMUST00000045706 6303 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Usp9x-201ENSMUST00000089302 11887 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Gm24789-201ENSMUST00000104282 131 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Znrd1-201ENSMUST00000113669 742 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Gm15067-201ENSMUST00000119534 156 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Gm11481-201ENSMUST00000120069 255 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Gm14629-201ENSMUST00000122428 144 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Vmn2r-ps58-201ENSMUST00000173044 242 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Mir7006-201ENSMUST00000183624 69 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Gm38238-201ENSMUST00000194334 346 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Gm42542-201ENSMUST00000197978 268 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 AC159231.1-201ENSMUST00000225365 226 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 n-R5s170-201ENSMUST00000083726 113 ntBASIC4.87□□□□□ -1.63
Rnf40Q3U319 Lin28b-201ENSMUST00000079390 5402 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Chrdl1-201ENSMUST00000063029 3550 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Olfr1312-203ENSMUST00000213961 5345 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Arhgap18-201ENSMUST00000039557 3651 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Olfr837-202ENSMUST00000215699 3758 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
Rnf40Q3U319 Gm42616-201ENSMUST00000198989 4184 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Ecm2-201ENSMUST00000051504 3596 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Scaper-205ENSMUST00000217647 4370 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
Rnf40Q3U319 AC117226.1-201ENSMUST00000221635 3737 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Vmn1r72-202ENSMUST00000209638 6501 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Olfr874-202ENSMUST00000216982 2632 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Ocrl-202ENSMUST00000115013 2910 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Vmn1r-ps120-201ENSMUST00000120288 377 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm12650-201ENSMUST00000121966 258 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm23171-201ENSMUST00000157159 264 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm25391-201ENSMUST00000157342 134 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm22983-201ENSMUST00000158308 104 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm25489-201ENSMUST00000158727 141 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Cox6b2-208ENSMUST00000183971 401 ntTSL 5 BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm37587-202ENSMUST00000194935 475 ntTSL 3 BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm45249-201ENSMUST00000211021 348 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 AC165953.1-201ENSMUST00000226386 357 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 AC154738.5-201ENSMUST00000227397 310 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 AC123665.4-201ENSMUST00000228790 249 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Cox6b2-201ENSMUST00000063324 553 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm25142-201ENSMUST00000082698 107 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm37626-201ENSMUST00000194332 4563 ntBASIC4.86□□□□□ -1.63
Rnf40Q3U319 Olfr1309-206ENSMUST00000217452 5257 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Gm5127-202ENSMUST00000101297 1809 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Rnf40Q3U319 Cyp3a41a-201ENSMUST00000094111 2060 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Dync2h1-204ENSMUST00000140466 14264 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Vmn1r178-205ENSMUST00000227993 2518 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Vmn2r48-201ENSMUST00000165611 2568 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm19541-201ENSMUST00000184488 2868 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
Rnf40Q3U319 AC158921.1-201ENSMUST00000227861 3468 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm13386-201ENSMUST00000117677 124 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm12723-201ENSMUST00000120700 451 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm14500-201ENSMUST00000121647 113 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm22490-201ENSMUST00000157188 119 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm26104-201ENSMUST00000157250 108 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm22378-201ENSMUST00000157481 111 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm26372-201ENSMUST00000157831 236 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gm25865-201ENSMUST00000158247 104 ntBASIC4.85□□□□□ -1.63
Rnf40Q3U319 Gas5-209ENSMUST00000159663 346 ntTSL 3 BASIC4.85□□□□□ -1.63
Retrieved 100 of 76,532 protein–RNA pairs in 92.8 ms