Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col4a4Q9QZR9 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Gm5648-201ENSMUST00000122244 1587 ntBASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col4a4Q9QZR9 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col4a4Q9QZR9 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gm27628-201ENSMUST00000184911 107 ntBASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col4a4Q9QZR9 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Gm8097-201ENSMUST00000117903 829 ntBASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.16■□□□□ 0.34
Col4a4Q9QZR9 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Gm12497-201ENSMUST00000138778 237 ntBASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col4a4Q9QZR9 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col4a4Q9QZR9 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms