Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Shroom3Q9QXN0 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.14■□□□□ 0.34
Shroom3Q9QXN0 AA414768-201ENSMUST00000121924 1257 ntBASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Shroom3Q9QXN0 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Shroom3Q9QXN0 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Gm9694-201ENSMUST00000193347 1189 ntBASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Shroom3Q9QXN0 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.11■□□□□ 0.33
Shroom3Q9QXN0 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Ank2-226ENSMUST00000189368 339 ntBASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Shroom3Q9QXN0 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Shroom3Q9QXN0 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Shroom3Q9QXN0 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
Shroom3Q9QXN0 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Shroom3Q9QXN0 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms