Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Vps28Q9D1C8 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Gm2274-201ENSMUST00000184539 609 ntBASIC17.52■□□□□ 0.4
Vps28Q9D1C8 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Vps28Q9D1C8 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Vps28Q9D1C8 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Vps28Q9D1C8 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Vps28Q9D1C8 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Vps28Q9D1C8 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Vps28Q9D1C8 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Gm18959-201ENSMUST00000208954 655 ntBASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Vps28Q9D1C8 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Gm17661-201ENSMUST00000170317 270 ntBASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Gm10231-201ENSMUST00000181584 441 ntBASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Gm10175-202ENSMUST00000208752 441 ntBASIC17.49■□□□□ 0.39
Vps28Q9D1C8 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms