Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdk9Q99J95 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Gm37179-201ENSMUST00000194862 823 ntBASIC17.25■□□□□ 0.35
Cdk9Q99J95 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdk9Q99J95 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cdk9Q99J95 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdk9Q99J95 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdk9Q99J95 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.22■□□□□ 0.35
Cdk9Q99J95 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdk9Q99J95 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Cdk9Q99J95 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdk9Q99J95 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms