Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim60Q8VI40 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim60Q8VI40 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim60Q8VI40 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim60Q8VI40 Tfap2a-209ENSMUST00000225180 1828 ntBASIC17.71■□□□□ 0.43
Trim60Q8VI40 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Trim60Q8VI40 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.71■□□□□ 0.43
Trim60Q8VI40 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim60Q8VI40 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim60Q8VI40 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim60Q8VI40 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim60Q8VI40 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.71■□□□□ 0.43
Trim60Q8VI40 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim60Q8VI40 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.71■□□□□ 0.42
Trim60Q8VI40 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Gm11249-201ENSMUST00000117071 859 ntBASIC17.7■□□□□ 0.42
Trim60Q8VI40 Gm13216-201ENSMUST00000117145 591 ntBASIC17.7■□□□□ 0.42
Trim60Q8VI40 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.7■□□□□ 0.42
Trim60Q8VI40 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.7■□□□□ 0.42
Trim60Q8VI40 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.7■□□□□ 0.42
Trim60Q8VI40 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim60Q8VI40 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.7■□□□□ 0.42
Trim60Q8VI40 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.69■□□□□ 0.42
Trim60Q8VI40 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Gm10602-201ENSMUST00000098239 609 ntBASIC17.69■□□□□ 0.42
Trim60Q8VI40 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim60Q8VI40 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim60Q8VI40 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.68■□□□□ 0.42
Trim60Q8VI40 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
Trim60Q8VI40 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.67■□□□□ 0.42
Trim60Q8VI40 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim60Q8VI40 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms