Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Ushbp1Q8R370 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ushbp1Q8R370 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.16■□□□□ 0.66
Ushbp1Q8R370 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Gm10517-202ENSMUST00000192970 758 ntBASIC19.16■□□□□ 0.66
Ushbp1Q8R370 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.16■□□□□ 0.66
Ushbp1Q8R370 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ushbp1Q8R370 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 AC159205.6-201ENSMUST00000224935 887 ntBASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Ushbp1Q8R370 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
Ushbp1Q8R370 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ushbp1Q8R370 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.14■□□□□ 0.65
Ushbp1Q8R370 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ushbp1Q8R370 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC19.14■□□□□ 0.65
Ushbp1Q8R370 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ushbp1Q8R370 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ushbp1Q8R370 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms