Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpp40Q8R1F9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpp40Q8R1F9 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.33■□□□□ 0.52
Rpp40Q8R1F9 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rpp40Q8R1F9 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
Rpp40Q8R1F9 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Gm22697-201ENSMUST00000175194 63 ntBASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rpp40Q8R1F9 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Gm10566-201ENSMUST00000086739 996 ntBASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rpp40Q8R1F9 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Gm18101-201ENSMUST00000215769 548 ntBASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rpp40Q8R1F9 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Mir1668-201ENSMUST00000184114 107 ntBASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpp40Q8R1F9 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Gm10013-201ENSMUST00000106074 672 ntBASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rpp40Q8R1F9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms