Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC20.18■□□□□ 0.82
Trim56Q80VI1 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim56Q80VI1 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim56Q80VI1 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 AC134329.2-201ENSMUST00000217897 428 ntBASIC20.15■□□□□ 0.82
Trim56Q80VI1 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Actl10-202ENSMUST00000226583 1501 ntBASIC20.15■□□□□ 0.82
Trim56Q80VI1 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Wnt10b-204ENSMUST00000226655 1807 ntBASIC20.15■□□□□ 0.82
Trim56Q80VI1 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim56Q80VI1 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trim56Q80VI1 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim56Q80VI1 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim56Q80VI1 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim56Q80VI1 Gm22697-201ENSMUST00000175194 63 ntBASIC20.14■□□□□ 0.81
Trim56Q80VI1 Gm7977-201ENSMUST00000193787 748 ntBASIC20.14■□□□□ 0.81
Trim56Q80VI1 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Trim56Q80VI1 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
Trim56Q80VI1 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim56Q80VI1 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Trim56Q80VI1 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 AL590614.2-201ENSMUST00000225374 1937 ntBASIC20.13■□□□□ 0.81
Trim56Q80VI1 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim56Q80VI1 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Mir1668-201ENSMUST00000184114 107 ntBASIC20.12■□□□□ 0.81
Trim56Q80VI1 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trim56Q80VI1 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim56Q80VI1 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms