Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Usp49Q6P9L4 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.14■□□□□ 0.66
Usp49Q6P9L4 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.14■□□□□ 0.66
Usp49Q6P9L4 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Gm37025-201ENSMUST00000195159 829 ntBASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp49Q6P9L4 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp49Q6P9L4 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp49Q6P9L4 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Gm3375-201ENSMUST00000203929 796 ntBASIC19.11■□□□□ 0.65
Usp49Q6P9L4 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Timm23-208ENSMUST00000226683 750 ntBASIC19.11■□□□□ 0.65
Usp49Q6P9L4 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 AL590614.2-201ENSMUST00000225374 1937 ntBASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
Usp49Q6P9L4 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Mir5122-201ENSMUST00000175004 89 ntBASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Gm9731-201ENSMUST00000209480 747 ntBASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp49Q6P9L4 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms