Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC22.29■■□□□ 1.16
Trim28Q62318 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim28Q62318 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim28Q62318 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim28Q62318 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim28Q62318 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim28Q62318 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Trim28Q62318 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Trim28Q62318 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
Trim28Q62318 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
Trim28Q62318 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC22.28■■□□□ 1.16
Trim28Q62318 Gm15794-201ENSMUST00000120182 631 ntBASIC22.28■■□□□ 1.16
Trim28Q62318 Olfr129-201ENSMUST00000122318 993 ntBASIC22.28■■□□□ 1.16
Trim28Q62318 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Trim28Q62318 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC22.28■■□□□ 1.16
Trim28Q62318 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Trim28Q62318 Gm27357-201ENSMUST00000183754 135 ntBASIC22.28■■□□□ 1.16
Trim28Q62318 Gm45328-201ENSMUST00000210942 917 ntBASIC22.28■■□□□ 1.16
Trim28Q62318 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim28Q62318 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim28Q62318 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC22.28■■□□□ 1.16
Trim28Q62318 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Trim28Q62318 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Trim28Q62318 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Trim28Q62318 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Trim28Q62318 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim28Q62318 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC22.28■■□□□ 1.16
Trim28Q62318 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 Otx2os1-206ENSMUST00000228153 787 ntBASIC22.27■■□□□ 1.16
Trim28Q62318 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim28Q62318 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Trim28Q62318 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC22.26■■□□□ 1.15
Trim28Q62318 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Trim28Q62318 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC22.26■■□□□ 1.15
Trim28Q62318 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim28Q62318 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC22.26■■□□□ 1.15
Trim28Q62318 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
Trim28Q62318 Gm28033-201ENSMUST00000184224 96 ntBASIC22.25■■□□□ 1.15
Trim28Q62318 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC22.25■■□□□ 1.15
Trim28Q62318 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim28Q62318 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
Trim28Q62318 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC22.24■■□□□ 1.15
Trim28Q62318 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC22.24■■□□□ 1.15
Trim28Q62318 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC22.24■■□□□ 1.15
Trim28Q62318 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC22.24■■□□□ 1.15
Trim28Q62318 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Trim28Q62318 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC22.24■■□□□ 1.15
Trim28Q62318 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim28Q62318 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim28Q62318 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
Trim28Q62318 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim28Q62318 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim28Q62318 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim28Q62318 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim28Q62318 Gm17807-201ENSMUST00000186869 298 ntBASIC22.23■■□□□ 1.15
Trim28Q62318 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim28Q62318 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim28Q62318 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC22.23■■□□□ 1.15
Trim28Q62318 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim28Q62318 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim28Q62318 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim28Q62318 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Trim28Q62318 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC22.22■■□□□ 1.15
Trim28Q62318 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC22.22■■□□□ 1.15
Trim28Q62318 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trim28Q62318 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC22.22■■□□□ 1.15
Trim28Q62318 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms