Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC19.65■□□□□ 0.74
Ccdc88aQ5SNZ0 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.64■□□□□ 0.74
Ccdc88aQ5SNZ0 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc88aQ5SNZ0 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc88aQ5SNZ0 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.64■□□□□ 0.74
Ccdc88aQ5SNZ0 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 AC132104.2-201ENSMUST00000215011 266 ntBASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc88aQ5SNZ0 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Actl10-202ENSMUST00000226583 1501 ntBASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc88aQ5SNZ0 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Olfr129-201ENSMUST00000122318 993 ntBASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc88aQ5SNZ0 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.61■□□□□ 0.73
Ccdc88aQ5SNZ0 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Gm5864-201ENSMUST00000202263 970 ntBASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ccdc88aQ5SNZ0 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ccdc88aQ5SNZ0 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms