Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Gm44450-201ENSMUST00000199528 114 ntBASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ddb1Q3U1J4 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Gm27702-201ENSMUST00000184512 56 ntBASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 AC159093.1-201ENSMUST00000227779 380 ntBASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ddb1Q3U1J4 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
Ddb1Q3U1J4 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Mir5126-201ENSMUST00000175513 77 ntBASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ddb1Q3U1J4 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Gm18421-201ENSMUST00000204122 625 ntBASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Ddb1Q3U1J4 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 AC154621.1-201ENSMUST00000226155 1119 ntBASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Gm32996-201ENSMUST00000199828 1447 ntBASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ddb1Q3U1J4 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
Ddb1Q3U1J4 Gm6736-201ENSMUST00000166583 948 ntBASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms