Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Col6a1Q04857 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a1Q04857 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a1Q04857 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.85■□□□□ 0.61
Col6a1Q04857 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.85■□□□□ 0.61
Col6a1Q04857 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a1Q04857 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a1Q04857 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a1Q04857 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Col6a1Q04857 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col6a1Q04857 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Col6a1Q04857 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a1Q04857 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a1Q04857 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.84■□□□□ 0.61
Col6a1Q04857 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Col6a1Q04857 Gm13401-201ENSMUST00000117074 291 ntBASIC18.84■□□□□ 0.61
Col6a1Q04857 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a1Q04857 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC18.84■□□□□ 0.61
Col6a1Q04857 Gm37935-201ENSMUST00000192012 982 ntBASIC18.84■□□□□ 0.61
Col6a1Q04857 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.84■□□□□ 0.61
Col6a1Q04857 Gm37025-201ENSMUST00000195159 829 ntBASIC18.84■□□□□ 0.61
Col6a1Q04857 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a1Q04857 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Col6a1Q04857 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a1Q04857 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a1Q04857 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col6a1Q04857 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a1Q04857 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a1Q04857 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a1Q04857 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a1Q04857 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a1Q04857 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Col6a1Q04857 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col6a1Q04857 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a1Q04857 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.83■□□□□ 0.6
Col6a1Q04857 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.83■□□□□ 0.6
Col6a1Q04857 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Col6a1Q04857 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
Col6a1Q04857 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a1Q04857 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC18.83■□□□□ 0.6
Col6a1Q04857 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
Col6a1Q04857 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a1Q04857 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a1Q04857 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a1Q04857 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col6a1Q04857 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col6a1Q04857 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col6a1Q04857 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Gm10418-201ENSMUST00000100943 576 ntBASIC18.82■□□□□ 0.6
Col6a1Q04857 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.82■□□□□ 0.6
Col6a1Q04857 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Gm5712-201ENSMUST00000199748 1043 ntBASIC18.82■□□□□ 0.6
Col6a1Q04857 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.82■□□□□ 0.6
Col6a1Q04857 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col6a1Q04857 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.82■□□□□ 0.6
Col6a1Q04857 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col6a1Q04857 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col6a1Q04857 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Gm18733-201ENSMUST00000173950 856 ntBASIC18.81■□□□□ 0.6
Col6a1Q04857 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col6a1Q04857 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Col6a1Q04857 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col6a1Q04857 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms