Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Cux1P53564 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Cux1P53564 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Cux1P53564 Zfp264-201ENSMUST00000208656 1563 ntBASIC26.31■■□□□ 1.8
Cux1P53564 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Cux1P53564 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC26.31■■□□□ 1.8
Cux1P53564 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Cux1P53564 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Cux1P53564 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Cux1P53564 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Cux1P53564 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Cux1P53564 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
Cux1P53564 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Cux1P53564 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cux1P53564 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Cux1P53564 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cux1P53564 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC26.3■■□□□ 1.8
Cux1P53564 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
Cux1P53564 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
Cux1P53564 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Cux1P53564 AL590614.2-201ENSMUST00000225374 1937 ntBASIC26.3■■□□□ 1.8
Cux1P53564 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cux1P53564 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC26.29■■□□□ 1.8
Cux1P53564 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cux1P53564 Gm27525-201ENSMUST00000184465 107 ntBASIC26.29■■□□□ 1.8
Cux1P53564 Gm6443-201ENSMUST00000203599 874 ntBASIC26.29■■□□□ 1.8
Cux1P53564 AC161829.1-201ENSMUST00000220298 281 ntBASIC26.29■■□□□ 1.8
Cux1P53564 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cux1P53564 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cux1P53564 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cux1P53564 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC26.29■■□□□ 1.8
Cux1P53564 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cux1P53564 Rps4l-201ENSMUST00000071745 943 ntBASIC26.29■■□□□ 1.8
Cux1P53564 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cux1P53564 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Cux1P53564 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cux1P53564 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cux1P53564 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC26.28■■□□□ 1.8
Cux1P53564 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cux1P53564 Gm10052-201ENSMUST00000168019 960 ntBASIC26.28■■□□□ 1.8
Cux1P53564 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Cux1P53564 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC26.28■■□□□ 1.8
Cux1P53564 Gm7729-201ENSMUST00000050143 801 ntBASIC26.28■■□□□ 1.8
Cux1P53564 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
Cux1P53564 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC26.28■■□□□ 1.8
Cux1P53564 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
Cux1P53564 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cux1P53564 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cux1P53564 Gm13312-201ENSMUST00000119631 718 ntBASIC26.27■■□□□ 1.8
Cux1P53564 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Cux1P53564 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Cux1P53564 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC26.27■■□□□ 1.8
Cux1P53564 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Cux1P53564 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cux1P53564 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Cux1P53564 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Gm27867-201ENSMUST00000184778 125 ntBASIC26.26■■□□□ 1.79
Cux1P53564 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
Cux1P53564 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC26.26■■□□□ 1.79
Cux1P53564 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
Cux1P53564 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cux1P53564 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
Cux1P53564 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cux1P53564 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cux1P53564 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC26.25■■□□□ 1.79
Cux1P53564 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC26.25■■□□□ 1.79
Cux1P53564 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Cux1P53564 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
Cux1P53564 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cux1P53564 Tfap2a-209ENSMUST00000225180 1828 ntBASIC26.25■■□□□ 1.79
Cux1P53564 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Cux1P53564 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cux1P53564 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cux1P53564 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Cux1P53564 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC26.24■■□□□ 1.79
Cux1P53564 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Cux1P53564 Gm18733-201ENSMUST00000173950 856 ntBASIC26.24■■□□□ 1.79
Cux1P53564 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC26.24■■□□□ 1.79
Cux1P53564 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC26.24■■□□□ 1.79
Cux1P53564 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Cux1P53564 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC26.24■■□□□ 1.79
Cux1P53564 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
Cux1P53564 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Cux1P53564 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC26.24■■□□□ 1.79
Cux1P53564 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC26.24■■□□□ 1.79
Cux1P53564 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Cux1P53564 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC26.24■■□□□ 1.79
Cux1P53564 Gfra2-202ENSMUST00000227633 1480 ntBASIC26.23■■□□□ 1.79
Cux1P53564 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Cux1P53564 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Cux1P53564 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Cux1P53564 Rprl3-201ENSMUST00000157400 290 ntBASIC26.23■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms