Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HttP42859 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HttP42859 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HttP42859 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC18.32■□□□□ 0.52
HttP42859 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.32■□□□□ 0.52
HttP42859 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC18.31■□□□□ 0.52
HttP42859 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HttP42859 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HttP42859 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 AC090659.1-201ENSMUST00000224334 768 ntBASIC18.31■□□□□ 0.52
HttP42859 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HttP42859 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.31■□□□□ 0.52
HttP42859 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
HttP42859 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HttP42859 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.31■□□□□ 0.52
HttP42859 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Wdyhv1-206ENSMUST00000227142 786 ntBASIC18.3■□□□□ 0.52
HttP42859 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Gm13186-201ENSMUST00000118031 316 ntBASIC18.3■□□□□ 0.52
HttP42859 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HttP42859 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HttP42859 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.29■□□□□ 0.52
HttP42859 Mir3113-201ENSMUST00000175478 76 ntBASIC18.29■□□□□ 0.52
HttP42859 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC18.29■□□□□ 0.52
HttP42859 Idnk-204ENSMUST00000226010 1898 ntBASIC18.29■□□□□ 0.52
HttP42859 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HttP42859 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC18.29■□□□□ 0.52
HttP42859 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HttP42859 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Gm27628-201ENSMUST00000184911 107 ntBASIC18.28■□□□□ 0.52
HttP42859 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HttP42859 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HttP42859 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC18.27■□□□□ 0.52
HttP42859 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HttP42859 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.27■□□□□ 0.52
HttP42859 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HttP42859 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HttP42859 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
HttP42859 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.27■□□□□ 0.52
HttP42859 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HttP42859 Mir6956-201ENSMUST00000183598 62 ntBASIC18.27■□□□□ 0.52
HttP42859 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HttP42859 AV026068-213ENSMUST00000223675 1171 ntBASIC18.27■□□□□ 0.52
HttP42859 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HttP42859 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.27■□□□□ 0.52
HttP42859 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HttP42859 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
HttP42859 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HttP42859 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC18.26■□□□□ 0.51
HttP42859 Gm44450-201ENSMUST00000199528 114 ntBASIC18.26■□□□□ 0.51
HttP42859 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.26■□□□□ 0.51
HttP42859 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
HttP42859 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HttP42859 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Gm14701-201ENSMUST00000117156 348 ntBASIC18.26■□□□□ 0.51
HttP42859 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.26■□□□□ 0.51
HttP42859 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HttP42859 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms