Protein–RNA interactions for Protein: P29533

Vcam1, Vascular cell adhesion protein 1, mousemouse

Predictions only

Length 739 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcam1P29533 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vcam1P29533 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vcam1P29533 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Vcam1P29533 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC19.71■□□□□ 0.75
Vcam1P29533 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.7■□□□□ 0.74
Vcam1P29533 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.7■□□□□ 0.74
Vcam1P29533 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Vcam1P29533 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Gm18115-201ENSMUST00000221209 621 ntBASIC19.7■□□□□ 0.74
Vcam1P29533 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Vcam1P29533 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 Gm44450-201ENSMUST00000199528 114 ntBASIC19.69■□□□□ 0.74
Vcam1P29533 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC19.69■□□□□ 0.74
Vcam1P29533 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vcam1P29533 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.69■□□□□ 0.74
Vcam1P29533 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Vcam1P29533 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.68■□□□□ 0.74
Vcam1P29533 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC19.68■□□□□ 0.74
Vcam1P29533 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC19.68■□□□□ 0.74
Vcam1P29533 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Vcam1P29533 Gm8969-201ENSMUST00000199694 526 ntBASIC19.68■□□□□ 0.74
Vcam1P29533 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Vcam1P29533 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
Vcam1P29533 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vcam1P29533 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vcam1P29533 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Vcam1P29533 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.67■□□□□ 0.74
Vcam1P29533 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vcam1P29533 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vcam1P29533 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vcam1P29533 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Vcam1P29533 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vcam1P29533 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Vcam1P29533 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vcam1P29533 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.66■□□□□ 0.74
Vcam1P29533 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vcam1P29533 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.66■□□□□ 0.74
Vcam1P29533 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC19.66■□□□□ 0.74
Vcam1P29533 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vcam1P29533 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vcam1P29533 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vcam1P29533 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC19.65■□□□□ 0.74
Vcam1P29533 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Vcam1P29533 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.65■□□□□ 0.74
Vcam1P29533 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Gm7153-201ENSMUST00000117092 455 ntBASIC19.65■□□□□ 0.74
Vcam1P29533 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.65■□□□□ 0.74
Vcam1P29533 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Vcam1P29533 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vcam1P29533 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Vcam1P29533 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vcam1P29533 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vcam1P29533 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC19.64■□□□□ 0.73
Vcam1P29533 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Vcam1P29533 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vcam1P29533 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vcam1P29533 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.64■□□□□ 0.73
Vcam1P29533 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vcam1P29533 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vcam1P29533 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Vcam1P29533 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vcam1P29533 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vcam1P29533 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Vcam1P29533 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vcam1P29533 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms