Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Gm10655-201ENSMUST00000098658 1397 ntBASIC13.81□□□□□ -0.2
Cdx1P18111 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdx1P18111 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdx1P18111 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Cdx1P18111 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Cdx1P18111 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Gm13534-201ENSMUST00000121169 513 ntBASIC13.8□□□□□ -0.2
Cdx1P18111 Gm10653-202ENSMUST00000139570 835 ntBASIC13.8□□□□□ -0.2
Cdx1P18111 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdx1P18111 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Cdx1P18111 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC13.8□□□□□ -0.2
Cdx1P18111 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC13.79□□□□□ -0.2
Cdx1P18111 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC13.79□□□□□ -0.2
Cdx1P18111 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Cdx1P18111 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Cdx1P18111 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC13.79□□□□□ -0.2
Cdx1P18111 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Cdx1P18111 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC13.79□□□□□ -0.2
Cdx1P18111 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC13.79□□□□□ -0.2
Cdx1P18111 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC13.79□□□□□ -0.2
Cdx1P18111 Gm8520-201ENSMUST00000186517 868 ntBASIC13.79□□□□□ -0.2
Cdx1P18111 Gm5408-201ENSMUST00000197998 747 ntBASIC13.79□□□□□ -0.2
Cdx1P18111 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC13.79□□□□□ -0.2
Cdx1P18111 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Cdx1P18111 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Gm16401-202ENSMUST00000197463 2074 ntBASIC13.79□□□□□ -0.2
Cdx1P18111 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC13.79□□□□□ -0.2
Cdx1P18111 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdx1P18111 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC13.78□□□□□ -0.2
Cdx1P18111 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Cdx1P18111 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC13.78□□□□□ -0.2
Cdx1P18111 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Cdx1P18111 Gm13148-201ENSMUST00000118892 745 ntBASIC13.78□□□□□ -0.2
Cdx1P18111 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Gm6420-201ENSMUST00000193885 723 ntBASIC13.78□□□□□ -0.2
Cdx1P18111 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Cdx1P18111 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Cdx1P18111 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cdx1P18111 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Cdx1P18111 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Cdx1P18111 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 69.6 ms