Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm38027-201ENSMUST00000192315 235 ntBASIC16.21■□□□□ 0.19
Msx1P13297 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Msx1P13297 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Msx1P13297 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Msx1P13297 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Msx1P13297 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Msx1P13297 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
Msx1P13297 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Msx1P13297 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Msx1P13297 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Msx1P13297 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.2■□□□□ 0.18
Msx1P13297 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Mir8112-201ENSMUST00000184382 131 ntBASIC16.2■□□□□ 0.18
Msx1P13297 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.2■□□□□ 0.18
Msx1P13297 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.2■□□□□ 0.18
Msx1P13297 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.2■□□□□ 0.18
Msx1P13297 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msx1P13297 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Msx1P13297 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Gm13401-201ENSMUST00000117074 291 ntBASIC16.19■□□□□ 0.18
Msx1P13297 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.19■□□□□ 0.18
Msx1P13297 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC16.19■□□□□ 0.18
Msx1P13297 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.19■□□□□ 0.18
Msx1P13297 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Msx1P13297 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Msx1P13297 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Msx1P13297 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Msx1P13297 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msx1P13297 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC16.18■□□□□ 0.18
Msx1P13297 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC16.18■□□□□ 0.18
Msx1P13297 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Msx1P13297 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msx1P13297 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Msx1P13297 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Msx1P13297 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Msx1P13297 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msx1P13297 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msx1P13297 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.17■□□□□ 0.18
Msx1P13297 Gm17971-201ENSMUST00000190239 806 ntBASIC16.17■□□□□ 0.18
Msx1P13297 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msx1P13297 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms