Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Gm13823-201ENSMUST00000119930 345 ntBASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 AC125350.2-201ENSMUST00000224737 727 ntBASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Gm2423-201ENSMUST00000074863 733 ntBASIC17.16■□□□□ 0.34
Col6a3E9PWQ3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Gm44945-201ENSMUST00000206764 1187 ntBASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Gm5866-201ENSMUST00000177881 973 ntBASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a3E9PWQ3 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a3E9PWQ3 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Gm5312-201ENSMUST00000203728 547 ntBASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 AC125206.2-201ENSMUST00000217454 574 ntBASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col6a3E9PWQ3 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a3E9PWQ3 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Gm7653-201ENSMUST00000214567 508 ntBASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Gm25857-201ENSMUST00000082788 129 ntBASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Gm6007-201ENSMUST00000208170 823 ntBASIC17.11■□□□□ 0.33
Col6a3E9PWQ3 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a3E9PWQ3 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col6a3E9PWQ3 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 78.5 ms