Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm20542-201ENSMUST00000174582 372 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm25397-201ENSMUST00000176951 92 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm24862-201ENSMUST00000179103 79 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm23310-201ENSMUST00000179105 79 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm25461-201ENSMUST00000179293 79 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm28282-201ENSMUST00000186072 186 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm29352-201ENSMUST00000188054 544 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm37698-201ENSMUST00000192605 463 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm38167-201ENSMUST00000195704 1178 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm44373-201ENSMUST00000196112 169 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm6059-201ENSMUST00000196903 340 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm44825-201ENSMUST00000207557 150 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm44598-201ENSMUST00000207566 150 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm7948-201ENSMUST00000212607 844 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm5175-202ENSMUST00000219699 529 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Scgb1a1-201ENSMUST00000025554 476 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ShhQ62226 Gm4987-201ENSMUST00000078326 408 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Olfr577-203ENSMUST00000215237 3144 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
ShhQ62226 Gm37645-201ENSMUST00000194285 3556 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm42585-201ENSMUST00000198731 4020 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Gm44925-201ENSMUST00000208879 2110 ntBASIC3.26□□□□□ -1.89
ShhQ62226 Slco1a4-203ENSMUST00000165990 3823 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ShhQ62226 Zbtb41-201ENSMUST00000039867 8361 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ShhQ62226 Olfr361-202ENSMUST00000214969 2749 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
ShhQ62226 Olfr1012-202ENSMUST00000214255 3115 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
ShhQ62226 Gm37494-202ENSMUST00000188038 16021 ntTSL 5 BASIC3.25□□□□□ -1.89
ShhQ62226 Trav16-201ENSMUST00000103667 420 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
ShhQ62226 Gm25308-201ENSMUST00000104171 158 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Olfr160-201ENSMUST00000104875 930 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
ShhQ62226 Gm14972-201ENSMUST00000121780 364 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm14768-201ENSMUST00000122126 678 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm22956-201ENSMUST00000122520 80 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm22479-201ENSMUST00000122566 81 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm23000-201ENSMUST00000157083 139 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm26101-201ENSMUST00000157246 105 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm24577-201ENSMUST00000158580 63 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm22242-201ENSMUST00000175224 118 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm21776-201ENSMUST00000177676 1083 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
ShhQ62226 Gm24019-201ENSMUST00000178620 107 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm26243-201ENSMUST00000179260 107 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm21913-201ENSMUST00000179880 1083 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
ShhQ62226 Hmgb1-rs16-201ENSMUST00000185927 613 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm29490-201ENSMUST00000190923 342 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Ighv1-32-201ENSMUST00000195149 351 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm45814-201ENSMUST00000212646 775 ntBASIC3.25□□□□□ -1.89
ShhQ62226 AC125311.1-201ENSMUST00000226950 220 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm23296-201ENSMUST00000082555 107 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Gm24859-201ENSMUST00000082729 107 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Olfr1340-201ENSMUST00000094834 951 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
ShhQ62226 Gm813-201ENSMUST00000099663 702 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ShhQ62226 Olfr142-202ENSMUST00000213968 3630 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
ShhQ62226 AC104897.1-201ENSMUST00000222638 3628 ntBASIC3.25□□□□□ -1.89
ShhQ62226 Fsip2-203ENSMUST00000143764 21116 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
ShhQ62226 Olfr1314-202ENSMUST00000207976 2976 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
ShhQ62226 Gm6325-201ENSMUST00000122015 3114 ntBASIC3.25□□□□□ -1.89
ShhQ62226 4932431L22Rik-201ENSMUST00000193456 3140 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Olfr1052-203ENSMUST00000217166 1694 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm23256-201ENSMUST00000102235 110 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Igkv5-39-201ENSMUST00000103370 287 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm13806-201ENSMUST00000117822 325 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm9059-201ENSMUST00000118319 183 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Rpl23a-ps13-201ENSMUST00000120350 441 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm13096-201ENSMUST00000127752 251 ntTSL 5 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm23257-201ENSMUST00000158322 132 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm24225-201ENSMUST00000158825 98 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm16567-201ENSMUST00000160967 576 ntTSL 5 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm15914-201ENSMUST00000161922 309 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm20692-201ENSMUST00000177251 681 ntTSL 3 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm22908-201ENSMUST00000177620 110 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm25671-201ENSMUST00000178612 105 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm23307-201ENSMUST00000179167 105 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm25286-201ENSMUST00000179790 105 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Mir6338-201ENSMUST00000183389 109 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm28724-201ENSMUST00000186149 625 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm19261-201ENSMUST00000189628 539 ntTSL 2 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm37029-201ENSMUST00000195773 239 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Igkv2-113-201ENSMUST00000196138 362 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Gm43150-201ENSMUST00000200931 636 ntTSL 3 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm43812-201ENSMUST00000200976 581 ntTSL 5 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm44030-201ENSMUST00000204865 432 ntBASIC3.24□□□□□ -1.89
ShhQ62226 AC107864.1-201ENSMUST00000217937 496 ntBASIC3.24□□□□□ -1.89
ShhQ62226 AC166341.3-201ENSMUST00000221861 114 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Olfr951-201ENSMUST00000078531 945 ntAPPRIS P2 BASIC3.24□□□□□ -1.89
ShhQ62226 Olfr954-201ENSMUST00000080329 945 ntAPPRIS P2 BASIC3.24□□□□□ -1.89
ShhQ62226 Gm25630-201ENSMUST00000084000 162 ntBASIC3.24□□□□□ -1.89
ShhQ62226 Olfr1002-201ENSMUST00000099920 957 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
ShhQ62226 Olfr986-203ENSMUST00000216720 3381 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
ShhQ62226 Olfr1354-203ENSMUST00000217073 3792 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
ShhQ62226 Gm14013-201ENSMUST00000119006 270 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm12793-201ENSMUST00000119268 292 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Scgb1b26-ps-201ENSMUST00000121845 291 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm15466-201ENSMUST00000122299 333 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm12272-201ENSMUST00000138136 333 ntTSL 5 BASIC3.23□□□□□ -1.89
ShhQ62226 Gm16354-201ENSMUST00000155376 150 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm22891-201ENSMUST00000158641 164 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm22668-201ENSMUST00000158716 260 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm20484-201ENSMUST00000173738 231 ntTSL 2 BASIC3.23□□□□□ -1.89
ShhQ62226 Mir6413-201ENSMUST00000184049 108 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm27308-201ENSMUST00000184807 233 ntBASIC3.23□□□□□ -1.89
ShhQ62226 Gm44223-201ENSMUST00000204854 114 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 76,532 protein–RNA pairs in 79 ms