Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7□□□□□ -1.29
DKK3Q9UBP4 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
DKK3Q9UBP4 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
DKK3Q9UBP4 RNA5SP176-201ENST00000390956 110 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 RNU2-72P-201ENST00000411175 163 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 RPL24P2-201ENST00000421023 475 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 EIF4A1P2-201ENST00000422633 1220 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 PAICSP2-201ENST00000429118 1150 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AC002069.1-201ENST00000429649 1159 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 PSMA6P2-201ENST00000457574 686 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 RPS26P11-201ENST00000463445 348 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 RPS26P6-201ENST00000475156 348 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AC026254.2-201ENST00000475295 371 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC7□□□□□ -1.29
DKK3Q9UBP4 RN7SL267P-201ENST00000485107 261 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC7□□□□□ -1.29
DKK3Q9UBP4 SUMO2P7-201ENST00000511179 285 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 RNA5SP318-201ENST00000516352 92 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 SUMO2P19-201ENST00000518920 295 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 OR4A46P-201ENST00000527255 933 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 RAB30-209ENST00000532548 644 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC007537.1-201ENST00000539347 327 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC7□□□□□ -1.29
DKK3Q9UBP4 HMGN1P26-201ENST00000558737 303 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC139493.1-201ENST00000604368 397 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AL355816.2-201ENST00000610049 647 ntBASIC7□□□□□ -1.29
DKK3Q9UBP4 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC7□□□□□ -1.29
DKK3Q9UBP4 PFKM-232ENST00000629846 381 ntTSL 4 BASIC7□□□□□ -1.29
DKK3Q9UBP4 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC7□□□□□ -1.29
DKK3Q9UBP4 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC7□□□□□ -1.29
DKK3Q9UBP4 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
DKK3Q9UBP4 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
DKK3Q9UBP4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
DKK3Q9UBP4 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
DKK3Q9UBP4 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC7□□□□□ -1.29
DKK3Q9UBP4 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC7□□□□□ -1.29
DKK3Q9UBP4 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC120036.2-201ENST00000509729 1474 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 TRIM53CP-201ENST00000531490 1354 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 RN7SKP232-201ENST00000410170 290 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 RN7SKP91-201ENST00000410852 288 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AL773545.3-201ENST00000414297 706 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 CYP4F32P-201ENST00000426492 504 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 VN1R53P-201ENST00000429536 957 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 BACH1-IT2-201ENST00000436529 806 ntTSL 5 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 RPS10P20-201ENST00000494130 463 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC008868.1-201ENST00000509786 737 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 RNA5SP278-201ENST00000517055 102 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 CASC11-203ENST00000519071 791 ntTSL 3 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC025423.2-201ENST00000537570 439 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AC091167.5-201ENST00000605689 894 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 U91328.4-201ENST00000608919 517 ntBASIC6.99□□□□□ -1.29
DKK3Q9UBP4 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC6.99□□□□□ -1.29
DKK3Q9UBP4 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms