Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm23180-201ENSMUST00000158686 125 ntBASIC1.74□□□□□ -2.13
Ccdc88bQ4QRL3 Gm17538-201ENSMUST00000168236 327 ntBASIC1.74□□□□□ -2.13
Ccdc88bQ4QRL3 Gm28647-201ENSMUST00000188416 197 ntBASIC1.74□□□□□ -2.13
Ccdc88bQ4QRL3 Vmn1r20-201ENSMUST00000226808 912 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
Ccdc88bQ4QRL3 AC158395.1-201ENSMUST00000227206 452 ntBASIC1.74□□□□□ -2.13
Ccdc88bQ4QRL3 Gm14558-201ENSMUST00000117458 381 ntBASIC1.73□□□□□ -2.13
Ccdc88bQ4QRL3 Rab9b-ps1-201ENSMUST00000119785 606 ntBASIC1.73□□□□□ -2.13
Ccdc88bQ4QRL3 Gm24878-201ENSMUST00000158782 104 ntBASIC1.73□□□□□ -2.13
Ccdc88bQ4QRL3 Gm26363-201ENSMUST00000158866 83 ntBASIC1.73□□□□□ -2.13
Ccdc88bQ4QRL3 Gm21064-202ENSMUST00000190583 278 ntBASIC1.73□□□□□ -2.13
Ccdc88bQ4QRL3 Olfr931-ps1-201ENSMUST00000214941 549 ntBASIC1.73□□□□□ -2.13
Ccdc88bQ4QRL3 Vmn1r75-205ENSMUST00000228268 4376 ntAPPRIS ALT2 BASIC1.73□□□□□ -2.13
Ccdc88bQ4QRL3 n-R5s67-201ENSMUST00000104336 114 ntBASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 Gm12327-201ENSMUST00000121729 1168 ntBASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 Gm25341-201ENSMUST00000157461 268 ntBASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 Vmn2r-ps80-201ENSMUST00000173697 914 ntBASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 Gm21834-201ENSMUST00000178907 453 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 Gm27762-201ENSMUST00000183417 109 ntBASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 Gm44845-201ENSMUST00000208773 335 ntBASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 4930401A07Rik-201ENSMUST00000214657 746 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
Ccdc88bQ4QRL3 Olfr606-202ENSMUST00000214631 2649 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm13903-201ENSMUST00000120945 193 ntBASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm12238-201ENSMUST00000127764 124 ntBASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm12272-201ENSMUST00000138136 333 ntTSL 5 BASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm29009-201ENSMUST00000186340 496 ntTSL 5 BASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm28552-201ENSMUST00000190725 388 ntBASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm43578-201ENSMUST00000201250 459 ntBASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm45754-201ENSMUST00000212380 279 ntBASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm23517-201ENSMUST00000082830 192 ntBASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm14910-201ENSMUST00000121037 1805 ntBASIC1.71□□□□□ -2.14
Ccdc88bQ4QRL3 Gm14444-202ENSMUST00000109070 1281 ntAPPRIS P1 TSL 3 BASIC1.7□□□□□ -2.14
Ccdc88bQ4QRL3 Ifnk-201ENSMUST00000058595 805 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
Ccdc88bQ4QRL3 Gm12006-201ENSMUST00000120786 403 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Mup-ps12-201ENSMUST00000126217 549 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm8206-202ENSMUST00000168733 516 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm45173-201ENSMUST00000206819 305 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm6377-201ENSMUST00000060013 2793 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Zfp37-202ENSMUST00000129511 1691 ntTSL 5 BASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Olfr1487-203ENSMUST00000209005 2061 ntTSL 3 BASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Olfr1135-202ENSMUST00000213835 2648 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm25759-201ENSMUST00000103988 129 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm23321-201ENSMUST00000104465 126 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm14751-201ENSMUST00000117693 222 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm12313-201ENSMUST00000121347 421 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm25150-201ENSMUST00000157121 60 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm5277-201ENSMUST00000164923 556 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Vmn1r238-201ENSMUST00000165255 921 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm6657-203ENSMUST00000188791 531 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm18488-201ENSMUST00000215082 364 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm26176-201ENSMUST00000083795 105 ntBASIC1.69□□□□□ -2.14
Ccdc88bQ4QRL3 Gm42968-201ENSMUST00000198578 1372 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Mir669f-201ENSMUST00000103850 121 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Gm14879-201ENSMUST00000117308 507 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Gm11404-201ENSMUST00000120872 494 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Vmn1r77-201ENSMUST00000164446 921 ntAPPRIS P2 BASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Vmn1r-ps143-201ENSMUST00000176730 604 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Gm29603-201ENSMUST00000186792 334 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Gm37523-201ENSMUST00000194901 412 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Gm45715-201ENSMUST00000206991 434 ntTSL 3 BASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 AC122210.1-201ENSMUST00000217923 675 ntTSL 3 BASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Gm24151-201ENSMUST00000082758 141 ntBASIC1.68□□□□□ -2.14
Ccdc88bQ4QRL3 Gm24594-201ENSMUST00000122502 99 ntBASIC1.67□□□□□ -2.14
Ccdc88bQ4QRL3 Cdrt4os2-201ENSMUST00000128675 494 ntTSL 2 BASIC1.67□□□□□ -2.14
Ccdc88bQ4QRL3 Mir5099-201ENSMUST00000175257 74 ntBASIC1.67□□□□□ -2.14
Ccdc88bQ4QRL3 Gm11392-201ENSMUST00000181419 710 ntBASIC1.67□□□□□ -2.14
Ccdc88bQ4QRL3 Olfr1319-ps1-201ENSMUST00000208550 274 ntBASIC1.67□□□□□ -2.14
Ccdc88bQ4QRL3 Olfr619-201ENSMUST00000098196 1124 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
Ccdc88bQ4QRL3 Gm25992-201ENSMUST00000102437 109 ntBASIC1.66□□□□□ -2.14
Ccdc88bQ4QRL3 Olfr180-201ENSMUST00000171656 1154 ntAPPRIS P2 TSL 2 BASIC1.66□□□□□ -2.14
Ccdc88bQ4QRL3 Gm22583-201ENSMUST00000178031 107 ntBASIC1.66□□□□□ -2.14
Ccdc88bQ4QRL3 1700112D23Rik-202ENSMUST00000193387 299 ntTSL 2 BASIC1.66□□□□□ -2.14
Ccdc88bQ4QRL3 Defb39-201ENSMUST00000075504 252 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
Ccdc88bQ4QRL3 2610044O15Rik8-201ENSMUST00000079272 264 ntTSL 5 BASIC1.66□□□□□ -2.14
Ccdc88bQ4QRL3 Gm14128-201ENSMUST00000119514 1011 ntBASIC1.65□□□□□ -2.15
Ccdc88bQ4QRL3 Gm45365-201ENSMUST00000209489 256 ntBASIC1.65□□□□□ -2.15
Ccdc88bQ4QRL3 Gm23850-201ENSMUST00000083830 169 ntBASIC1.65□□□□□ -2.15
Ccdc88bQ4QRL3 Olfr1208-203ENSMUST00000214297 2844 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
Ccdc88bQ4QRL3 Zfp600-201ENSMUST00000092750 4154 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
Ccdc88bQ4QRL3 Vmn1r75-204ENSMUST00000227611 4336 ntAPPRIS ALT2 BASIC1.65□□□□□ -2.15
Ccdc88bQ4QRL3 Gm12235-201ENSMUST00000118596 170 ntBASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Gm14951-201ENSMUST00000143622 570 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Gm14041-201ENSMUST00000150181 276 ntTSL 3 BASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 U6.1-201ENSMUST00000157443 101 ntBASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Olfr1366-201ENSMUST00000168629 1054 ntAPPRIS ALT2 BASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Gm28710-201ENSMUST00000186866 489 ntTSL 5 BASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Gm28437-201ENSMUST00000190277 783 ntBASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Gm38045-201ENSMUST00000193536 199 ntTSL 5 BASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Olfr1366-204ENSMUST00000218154 1054 ntAPPRIS P2 BASIC1.64□□□□□ -2.15
Ccdc88bQ4QRL3 Gm45886-201ENSMUST00000148141 342 ntTSL 5 BASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm8013-201ENSMUST00000200139 462 ntTSL 2 BASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm44348-201ENSMUST00000200165 122 ntBASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm8219-201ENSMUST00000218309 242 ntBASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm34240-201ENSMUST00000192500 1936 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm6096-201ENSMUST00000105172 456 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm15530-201ENSMUST00000122206 555 ntBASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm24222-201ENSMUST00000158834 93 ntBASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm20534-201ENSMUST00000172957 172 ntBASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Vmn2r-ps55-201ENSMUST00000173834 240 ntBASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm24561-201ENSMUST00000175182 95 ntBASIC1.63□□□□□ -2.15
Ccdc88bQ4QRL3 Gm19641-201ENSMUST00000188432 417 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 76,532 protein–RNA pairs in 88.4 ms