Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mir21a-201ENSMUST00000083521 92 ntBASIC5.13□□□□□ -1.59
Rnf40Q3U319 Mirlet7f-2-201ENSMUST00000083668 83 ntBASIC5.13□□□□□ -1.59
Rnf40Q3U319 Gm25257-201ENSMUST00000083907 110 ntBASIC5.13□□□□□ -1.59
Rnf40Q3U319 6720489N17Rik-202ENSMUST00000201563 2640 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
Rnf40Q3U319 Gm37788-201ENSMUST00000193958 2705 ntBASIC5.13□□□□□ -1.59
Rnf40Q3U319 Klhl28-203ENSMUST00000222508 6459 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
Rnf40Q3U319 Gm30302-202ENSMUST00000220773 3511 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
Rnf40Q3U319 Olfr1313-202ENSMUST00000213577 2588 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Olfr1484-203ENSMUST00000215567 3699 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Cdh12-203ENSMUST00000227496 6004 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Dmd-201ENSMUST00000113991 4438 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Hdx-202ENSMUST00000113422 9534 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
Rnf40Q3U319 S100a5-201ENSMUST00000001049 422 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm14221-201ENSMUST00000109473 340 ntTSL 3 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm22033-201ENSMUST00000116947 90 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm11852-201ENSMUST00000120806 222 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm23774-201ENSMUST00000158990 131 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm38298-201ENSMUST00000193578 118 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm44337-201ENSMUST00000196553 114 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Igkv13-80-1-201ENSMUST00000197926 255 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm32536-201ENSMUST00000205209 445 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Tnfrsf23-203ENSMUST00000208017 544 ntTSL 3 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm34719-201ENSMUST00000222231 382 ntTSL 5 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm18441-201ENSMUST00000223539 617 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm24948-201ENSMUST00000082866 207 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm44435-201ENSMUST00000204379 4119 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Olfr599-202ENSMUST00000214329 2183 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Olfr992-203ENSMUST00000214895 2222 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Gm10400-201ENSMUST00000203920 3835 ntBASIC5.12□□□□□ -1.59
Rnf40Q3U319 Macc1-201ENSMUST00000048880 3818 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Zfp62-212ENSMUST00000180016 3964 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Vmn1r184-202ENSMUST00000227230 7999 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
Rnf40Q3U319 Stxbp4-207ENSMUST00000143203 5985 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Zfp980-201ENSMUST00000105738 4006 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Olfr980-202ENSMUST00000216463 3050 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Olfr2-203ENSMUST00000208147 6178 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm22148-201ENSMUST00000104445 107 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm25889-201ENSMUST00000157775 107 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm22553-201ENSMUST00000157797 295 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm22069-201ENSMUST00000179911 107 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm6135-201ENSMUST00000198726 372 ntTSL 2 BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm42814-201ENSMUST00000199370 460 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm17887-201ENSMUST00000200194 547 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Igkv13-55-1-201ENSMUST00000200400 308 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm25634-201ENSMUST00000082667 105 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Gm25409-201ENSMUST00000083764 131 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Olfr243-201ENSMUST00000098194 951 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Olfr1317-203ENSMUST00000214801 2578 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Kif20b-201ENSMUST00000087341 5564 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Pnpla8-201ENSMUST00000043082 13507 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Xirp2-202ENSMUST00000112347 11979 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Elavl2-202ENSMUST00000102799 3840 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Rnf40Q3U319 AC155830.1-201ENSMUST00000220050 3836 ntBASIC5.11□□□□□ -1.59
Rnf40Q3U319 Dync2h1-201ENSMUST00000048417 13972 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Rab30-201ENSMUST00000032879 9456 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Rnf40Q3U319 Vmn2r49-201ENSMUST00000108550 2559 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm4788-202ENSMUST00000111986 2935 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Zfp322a-201ENSMUST00000050101 4844 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm22477-201ENSMUST00000122569 316 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm25967-201ENSMUST00000157168 147 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm22557-201ENSMUST00000157804 102 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm17103-201ENSMUST00000168897 549 ntTSL 3 BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm22932-201ENSMUST00000175510 72 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm23415-201ENSMUST00000175519 83 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Trav6-4-202ENSMUST00000184650 338 ntAPPRIS ALT2 BASIC5.1□□□□□ -1.59
Rnf40Q3U319 9530022L04Rik-201ENSMUST00000194340 310 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm29813-201ENSMUST00000195856 447 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm9251-201ENSMUST00000197202 628 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm30332-201ENSMUST00000204221 2345 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm45411-201ENSMUST00000209647 345 ntTSL 5 BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Olfr231-202ENSMUST00000214446 5204 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm18015-201ENSMUST00000214879 316 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 CU062626.2-201ENSMUST00000223953 274 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Vmn1r14-203ENSMUST00000227574 7394 ntAPPRIS ALT2 BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm22247-201ENSMUST00000082476 131 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Gm23464-201ENSMUST00000083145 147 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Mir199a-2-201ENSMUST00000093618 110 ntBASIC5.1□□□□□ -1.59
Rnf40Q3U319 Olfr716-207ENSMUST00000216871 4062 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Zfp287-201ENSMUST00000005399 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Olfr101-203ENSMUST00000215392 2899 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
Rnf40Q3U319 Olfr556-202ENSMUST00000213485 3825 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
Rnf40Q3U319 Cnot4-206ENSMUST00000202143 3202 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
Rnf40Q3U319 Olfr705-202ENSMUST00000213721 3001 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm43668-201ENSMUST00000197014 5342 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm21037-201ENSMUST00000209086 2608 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Igkv1-88-201ENSMUST00000103336 362 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
Rnf40Q3U319 Trav6n-6-201ENSMUST00000103613 287 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm12449-201ENSMUST00000117572 234 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm15265-201ENSMUST00000133494 551 ntTSL 2 BASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm25430-201ENSMUST00000157614 289 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm26373-201ENSMUST00000157833 103 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm29104-201ENSMUST00000186304 222 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm43424-201ENSMUST00000200484 253 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm9377-201ENSMUST00000207227 623 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 AC131720.3-201ENSMUST00000219113 275 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm40810-201ENSMUST00000219149 253 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 CT033781.2-201ENSMUST00000221113 153 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm23453-201ENSMUST00000083326 106 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Mir488-201ENSMUST00000093595 109 ntBASIC5.09□□□□□ -1.59
Rnf40Q3U319 Gm25821-201ENSMUST00000093657 133 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 76,532 protein–RNA pairs in 78.1 ms