Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Vmn2r38-201ENSMUST00000108554 3663 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm37777-201ENSMUST00000195546 3366 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 A630033H20Rik-206ENSMUST00000180182 2997 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gpr174-203ENSMUST00000118820 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm42639-201ENSMUST00000197061 1871 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm35835-202ENSMUST00000216984 3350 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Vmn2r90-201ENSMUST00000169805 2592 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm5724-201ENSMUST00000148411 2449 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Prlr-202ENSMUST00000124470 9900 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm24683-201ENSMUST00000104840 88 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm15613-201ENSMUST00000118396 326 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm12023-201ENSMUST00000145182 520 ntTSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm3848-202ENSMUST00000151564 301 ntTSL 3 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm23391-201ENSMUST00000157579 104 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm23666-201ENSMUST00000158053 116 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm25066-201ENSMUST00000158145 123 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Clec9a-203ENSMUST00000164513 714 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Mir5624-201ENSMUST00000176635 61 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm36934-201ENSMUST00000192007 306 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm37001-201ENSMUST00000193377 190 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm43236-201ENSMUST00000197414 313 ntTSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm3143-202ENSMUST00000198364 675 ntTSL 2 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm44475-201ENSMUST00000204041 424 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm45614-201ENSMUST00000209994 721 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm45778-201ENSMUST00000211959 153 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm34158-201ENSMUST00000216390 567 ntTSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 AC102312.1-201ENSMUST00000217752 475 ntTSL 3 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 AL662807.1-201ENSMUST00000224183 126 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 AC147633.1-201ENSMUST00000225134 259 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm26128-201ENSMUST00000083170 110 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm22739-201ENSMUST00000083437 160 ntBASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm3259-201ENSMUST00000101015 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Olfr513-202ENSMUST00000214670 2029 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Zfp992-201ENSMUST00000105733 4550 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Sult1b1-202ENSMUST00000117455 2612 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Olfr1448-204ENSMUST00000216888 4064 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Cp-201ENSMUST00000003714 4092 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
Col28a1Q2UY11 Gm45304-201ENSMUST00000210303 2828 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm3239-201ENSMUST00000163525 1751 ntAPPRIS P5 TSL 5 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Olfr136-203ENSMUST00000208539 1773 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm15127-203ENSMUST00000112753 1950 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Nlrp9a-202ENSMUST00000108387 3336 ntAPPRIS P4 TSL 1 (best) BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Mannr-201ENSMUST00000193549 1438 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 A630033H20Rik-205ENSMUST00000167673 3044 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Trbv13-1-201ENSMUST00000103268 334 ntAPPRIS ALT2 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Igkv9-129-201ENSMUST00000103308 350 ntAPPRIS ALT2 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Trav7n-4-201ENSMUST00000103609 341 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm25168-201ENSMUST00000104189 132 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm24889-201ENSMUST00000104388 132 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm12255-201ENSMUST00000117184 284 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm12125-201ENSMUST00000117261 736 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm15106-201ENSMUST00000119691 821 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm12739-201ENSMUST00000119769 382 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm14926-201ENSMUST00000120650 508 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm11229-201ENSMUST00000121993 437 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm14578-201ENSMUST00000122166 391 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm23169-201ENSMUST00000157157 112 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm26348-201ENSMUST00000157528 240 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm22842-201ENSMUST00000157709 118 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm24008-201ENSMUST00000157733 138 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm23523-201ENSMUST00000180190 107 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Mir7578-201ENSMUST00000183455 82 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm28717-201ENSMUST00000189950 315 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Topbp1-ps2-201ENSMUST00000191289 189 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm39038-201ENSMUST00000206774 355 ntTSL 3 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Gm18854-201ENSMUST00000211196 329 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 AC138290.2-201ENSMUST00000218822 369 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 AC099578.1-201ENSMUST00000220147 435 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 AC124581.4-201ENSMUST00000225874 463 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 AC125311.1-201ENSMUST00000226950 220 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 AC157572.3-201ENSMUST00000227288 303 ntBASIC3.38□□□□□ -1.87
Col28a1Q2UY11 4932414N04Rik-201ENSMUST00000055930 3519 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
Col28a1Q2UY11 Olfr681-204ENSMUST00000215564 4487 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 5330434G04Rik-203ENSMUST00000142109 3449 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Olfr812-203ENSMUST00000205013 1718 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Hnmt-202ENSMUST00000114497 994 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm15951-201ENSMUST00000118377 400 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm14765-201ENSMUST00000121954 326 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm23213-201ENSMUST00000122715 313 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm14100-201ENSMUST00000125575 651 ntTSL 3 BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm11337-201ENSMUST00000144770 335 ntTSL 2 BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm20399-201ENSMUST00000174652 132 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Mir5099-201ENSMUST00000175257 74 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm23660-201ENSMUST00000178362 79 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm24100-201ENSMUST00000178592 79 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm24088-201ENSMUST00000179100 79 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm24137-201ENSMUST00000180055 79 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm22391-201ENSMUST00000180356 79 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm27648-201ENSMUST00000184315 107 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm27490-201ENSMUST00000184754 128 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Tmem167-ps3-201ENSMUST00000186718 178 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Snhg14-207ENSMUST00000188162 770 ntTSL 5 BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Smcp-202ENSMUST00000194965 744 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm37817-201ENSMUST00000195276 434 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm44083-201ENSMUST00000203114 337 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm32381-201ENSMUST00000203192 476 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm6012-201ENSMUST00000210821 730 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 Gm45368-202ENSMUST00000210944 416 ntTSL 5 BASIC3.37□□□□□ -1.87
Col28a1Q2UY11 LOC667541-201ENSMUST00000223408 278 ntBASIC3.37□□□□□ -1.87
Col28a1Q2UY11 AC124400.1-201ENSMUST00000225779 193 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 76,532 protein–RNA pairs in 84.6 ms