Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Mcmdc2-203ENSMUST00000125294 2003 ntTSL 5 BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm14987-201ENSMUST00000117820 676 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm11322-201ENSMUST00000118095 435 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm8217-201ENSMUST00000119136 465 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm12137-201ENSMUST00000119565 346 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm13419-201ENSMUST00000121711 271 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm13368-201ENSMUST00000122443 430 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm22101-201ENSMUST00000157928 103 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Mir3103-201ENSMUST00000175474 67 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm22908-201ENSMUST00000177620 110 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm27385-201ENSMUST00000184747 104 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm27490-201ENSMUST00000184754 128 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Scgb2b21-201ENSMUST00000185407 520 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm29062-201ENSMUST00000186032 694 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Topbp1-ps2-201ENSMUST00000191289 189 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm6510-201ENSMUST00000195916 574 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm44703-201ENSMUST00000205724 248 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm5322-201ENSMUST00000206142 699 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm44966-201ENSMUST00000208096 157 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Gm45455-202ENSMUST00000211156 630 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 AL450317.1-201ENSMUST00000213941 291 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 AC121286.1-201ENSMUST00000218811 380 ntTSL 3 BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 AC155830.1-201ENSMUST00000220050 3836 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 AC117202.2-201ENSMUST00000226491 1101 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 AC115291.1-201ENSMUST00000226803 258 ntBASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 S100a11-201ENSMUST00000029515 511 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Cyp3a13-201ENSMUST00000031741 2956 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Olfr497-201ENSMUST00000076406 945 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Vmn1r80-209ENSMUST00000228578 11005 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 A230057D06Rik-202ENSMUST00000207061 3717 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Olfr1471-204ENSMUST00000217249 1662 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
Ddb1Q3U1J4 Olfr910-201ENSMUST00000215122 1996 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Olfr1274-ps-202ENSMUST00000216111 3395 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Kctd4-201ENSMUST00000050120 3998 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Ifi213-202ENSMUST00000150649 2748 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Gm37478-201ENSMUST00000193624 3495 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Gm24635-201ENSMUST00000122712 128 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 AI847159-204ENSMUST00000148997 753 ntTSL 3 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Gm23123-201ENSMUST00000157648 144 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Gm24876-201ENSMUST00000158780 92 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Trav17-202ENSMUST00000186545 338 ntAPPRIS ALT2 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Gm29423-207ENSMUST00000189580 255 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 4930511M18Rik-201ENSMUST00000197811 679 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Olfr662-ps1-201ENSMUST00000210704 396 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Olfr1266-ps1-201ENSMUST00000214850 180 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Olfr814-203ENSMUST00000216966 3819 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 AC158523.1-201ENSMUST00000221398 328 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Olfr769-201ENSMUST00000050915 1084 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Gm22365-201ENSMUST00000093750 117 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Gm43486-201ENSMUST00000196431 4339 ntBASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 1810006J02Rik-201ENSMUST00000186473 1687 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
Ddb1Q3U1J4 Olfr65-203ENSMUST00000214300 2855 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
Ddb1Q3U1J4 Ccdc178-201ENSMUST00000025160 3335 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
Ddb1Q3U1J4 Xrn1-202ENSMUST00000185633 10256 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
Ddb1Q3U1J4 Olfr1270-202ENSMUST00000213946 4930 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
Ddb1Q3U1J4 Gm3259-201ENSMUST00000101015 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r77-203ENSMUST00000227320 8308 ntAPPRIS P2 BASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Mier1-201ENSMUST00000030247 4703 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Mir1198-201ENSMUST00000116995 121 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Mir669i-201ENSMUST00000117007 127 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm13511-201ENSMUST00000121167 363 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm11849-201ENSMUST00000121293 261 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm11229-201ENSMUST00000121993 437 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm14684-201ENSMUST00000145722 123 ntTSL 5 BASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm20543-201ENSMUST00000174200 726 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm8906-202ENSMUST00000179375 465 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm7751-201ENSMUST00000212868 709 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm18252-201ENSMUST00000214814 527 ntTSL 5 BASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 AC116460.1-201ENSMUST00000219040 313 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm23627-201ENSMUST00000082459 107 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm22502-201ENSMUST00000082488 107 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm24149-201ENSMUST00000082757 107 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Mir28a-201ENSMUST00000083560 86 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Gm17969-201ENSMUST00000185706 2557 ntBASIC4.33□□□□□ -1.72
Ddb1Q3U1J4 Cwf19l2-201ENSMUST00000027027 4446 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Cr2-212ENSMUST00000210219 4227 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Mctp1-202ENSMUST00000109589 1653 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Vmn1r14-202ENSMUST00000227209 6857 ntAPPRIS ALT2 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Fsip2-203ENSMUST00000143764 21116 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm2042-207ENSMUST00000181326 2440 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Snord70-201ENSMUST00000104157 87 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm13504-201ENSMUST00000117490 316 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Rpl31-ps5-201ENSMUST00000118086 375 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm22036-201ENSMUST00000157279 215 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Vmn2r-ps70-201ENSMUST00000174636 302 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Ifi213-205ENSMUST00000180215 643 ntAPPRIS P2 TSL 3 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm29591-201ENSMUST00000188215 357 ntTSL 5 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm37455-201ENSMUST00000191993 529 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm33354-201ENSMUST00000195448 906 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm19147-201ENSMUST00000199622 652 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm30534-201ENSMUST00000217928 207 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Zmynd11-223ENSMUST00000222358 340 ntTSL 5 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm20102-201ENSMUST00000222445 220 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm26055-201ENSMUST00000083038 107 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm43736-201ENSMUST00000196377 2281 ntBASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Mga-202ENSMUST00000079934 13304 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Ccr2-202ENSMUST00000165984 3515 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
Ddb1Q3U1J4 Gm36944-201ENSMUST00000192257 2759 ntBASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Olfr1309-203ENSMUST00000214935 5448 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
Ddb1Q3U1J4 Ighv1-47-201ENSMUST00000103518 294 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
Retrieved 100 of 76,532 protein–RNA pairs in 110.6 ms