Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm26228-201ENSMUST00000082512 107 ntBASIC3.43□□□□□ -1.86
Col28a1Q2UY11 Gm25080-201ENSMUST00000082526 107 ntBASIC3.43□□□□□ -1.86
Col28a1Q2UY11 Gm25518-201ENSMUST00000083864 107 ntBASIC3.43□□□□□ -1.86
Col28a1Q2UY11 Vmn1r63-201ENSMUST00000075085 2172 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
Col28a1Q2UY11 Gm18360-201ENSMUST00000173327 1524 ntBASIC3.43□□□□□ -1.86
Col28a1Q2UY11 Zfp616-201ENSMUST00000074813 5014 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
Col28a1Q2UY11 Vmn2r-ps104-201ENSMUST00000099416 1671 ntTSL 5 BASIC3.43□□□□□ -1.86
Col28a1Q2UY11 Zfp945-205ENSMUST00000160457 6497 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm14327-202ENSMUST00000108935 1451 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Mir297a-2-201ENSMUST00000103795 90 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm24079-201ENSMUST00000104352 132 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm24376-201ENSMUST00000104399 127 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Apool-202ENSMUST00000113415 783 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm6760-201ENSMUST00000114682 604 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm14541-201ENSMUST00000118985 157 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm13064-201ENSMUST00000119125 557 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 n-R5s68-201ENSMUST00000122639 82 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm24439-201ENSMUST00000157894 117 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm17148-201ENSMUST00000164702 249 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Vmn1r-ps40-201ENSMUST00000172862 343 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm23152-201ENSMUST00000175322 116 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Scgb2b21-201ENSMUST00000185407 520 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm18964-201ENSMUST00000193013 563 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm38361-201ENSMUST00000193419 458 ntTSL 5 BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Ighv1-17-1-201ENSMUST00000194849 351 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm18551-201ENSMUST00000195594 642 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm44016-201ENSMUST00000203463 164 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm44703-201ENSMUST00000205724 248 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Spcs2-205ENSMUST00000207580 868 ntTSL 5 BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm35548-201ENSMUST00000214348 441 ntTSL 5 BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Olfr927-ps1-201ENSMUST00000216759 782 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm20734-201ENSMUST00000216939 193 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 AC091783.5-201ENSMUST00000224928 671 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 AC133598.4-202ENSMUST00000225267 469 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Olfr1031-201ENSMUST00000050942 1011 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm10038-201ENSMUST00000077233 441 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm25792-201ENSMUST00000083289 100 ntBASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Dock11-203ENSMUST00000115266 6047 ntTSL 5 BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm45389-201ENSMUST00000211163 3399 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Adam5-201ENSMUST00000050300 2560 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Nae1-201ENSMUST00000034349 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Postn-203ENSMUST00000107985 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Gm4211-201ENSMUST00000181103 2220 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
Col28a1Q2UY11 Olfr629-202ENSMUST00000213906 2548 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm9911-201ENSMUST00000211467 2802 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm23175-201ENSMUST00000104371 132 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm5483-201ENSMUST00000114858 414 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm14142-201ENSMUST00000117833 296 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm12871-201ENSMUST00000118758 438 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm11794-201ENSMUST00000119446 237 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm25105-201ENSMUST00000122477 130 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm14271-201ENSMUST00000137886 630 ntTSL 3 BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm23167-201ENSMUST00000157155 103 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm23540-201ENSMUST00000157543 164 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm22839-201ENSMUST00000158436 304 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 H2al1k-201ENSMUST00000178196 510 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm26180-201ENSMUST00000179942 107 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm11395-201ENSMUST00000181011 499 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Mir6914-201ENSMUST00000184999 69 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm37343-201ENSMUST00000192542 111 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm37698-201ENSMUST00000192605 463 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm37617-201ENSMUST00000194309 159 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm42470-201ENSMUST00000198086 251 ntTSL 3 BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 E330011O21Rik-203ENSMUST00000210555 455 ntTSL 5 BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 AC125379.1-201ENSMUST00000221928 111 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm24042-201ENSMUST00000083114 103 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Snord15a-201ENSMUST00000083888 148 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Pkhd1l1-202ENSMUST00000166957 12747 ntTSL 5 BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Pkhd1l1-201ENSMUST00000038336 12741 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm45540-201ENSMUST00000209271 3606 ntBASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm4567-202ENSMUST00000190554 1581 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm10668-202ENSMUST00000191073 1581 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Olfr112-201ENSMUST00000085548 3103 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
Col28a1Q2UY11 Gm8011-201ENSMUST00000172163 1751 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
Col28a1Q2UY11 Olfr1477-201ENSMUST00000214274 3913 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
Col28a1Q2UY11 Tecrl-201ENSMUST00000053543 2350 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
Col28a1Q2UY11 Ifi208-201ENSMUST00000085876 2990 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
Col28a1Q2UY11 Vmn2r82-201ENSMUST00000170596 3045 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
Col28a1Q2UY11 Spink2-202ENSMUST00000120429 594 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm14577-201ENSMUST00000121134 256 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Crem-231ENSMUST00000152108 654 ntTSL 5 BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm23667-201ENSMUST00000157466 120 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Mir3964-201ENSMUST00000174898 74 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm27402-201ENSMUST00000183890 120 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Sprr2g-202ENSMUST00000189634 651 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm38045-201ENSMUST00000193536 199 ntTSL 5 BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm42832-201ENSMUST00000196361 745 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm9379-201ENSMUST00000196790 646 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Igkv2-105-201ENSMUST00000196931 377 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm44063-201ENSMUST00000203307 376 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm43914-201ENSMUST00000203592 594 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm32443-202ENSMUST00000220011 773 ntTSL 5 BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 AC124549.2-201ENSMUST00000224243 222 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 AC170600.1-201ENSMUST00000228763 277 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Scgb1a1-201ENSMUST00000025554 476 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Sprr2g-201ENSMUST00000056590 650 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Mir133a-2-201ENSMUST00000083526 104 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Gm15292-201ENSMUST00000098895 385 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
Col28a1Q2UY11 AC158921.1-201ENSMUST00000227861 3468 ntBASIC3.4□□□□□ -1.87
Col28a1Q2UY11 Csnka2ip-202ENSMUST00000209382 2859 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
Retrieved 100 of 76,532 protein–RNA pairs in 82.6 ms